University of Turin logo DBIOS logo


Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Jan 10 05:32:46 2021 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

Go to home

Zimbabwe

Number of isolates sequences available: 100

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
EPI_ISL_644738
EPI_ISL_644739
EPI_ISL_644740
EPI_ISL_644741
EPI_ISL_644742
EPI_ISL_644743
EPI_ISL_644744
EPI_ISL_644745
EPI_ISL_644746
EPI_ISL_644747
EPI_ISL_644748
EPI_ISL_644749
EPI_ISL_644750
EPI_ISL_644751
EPI_ISL_644752
EPI_ISL_644753
EPI_ISL_644754
EPI_ISL_644755
EPI_ISL_644756
EPI_ISL_644757
EPI_ISL_644758
EPI_ISL_644759
EPI_ISL_644760
EPI_ISL_644761
EPI_ISL_644762
EPI_ISL_644763
EPI_ISL_644764
EPI_ISL_644765
EPI_ISL_644766
EPI_ISL_644767
EPI_ISL_644768
EPI_ISL_644769
EPI_ISL_644770
EPI_ISL_644771
EPI_ISL_644772
EPI_ISL_644773
EPI_ISL_644774
EPI_ISL_644775
EPI_ISL_644776
EPI_ISL_644777
EPI_ISL_644778
EPI_ISL_644779
EPI_ISL_644780
EPI_ISL_644781
EPI_ISL_644782
EPI_ISL_644783
EPI_ISL_644784
EPI_ISL_644785
EPI_ISL_644786
EPI_ISL_644787
EPI_ISL_644788
EPI_ISL_644789
EPI_ISL_644790
EPI_ISL_644791
EPI_ISL_644792
EPI_ISL_644793
EPI_ISL_644794
EPI_ISL_644795
EPI_ISL_644796
EPI_ISL_644797
EPI_ISL_644798
EPI_ISL_644799
EPI_ISL_644800
EPI_ISL_644801
EPI_ISL_644802
EPI_ISL_644803
EPI_ISL_644804
EPI_ISL_644805
EPI_ISL_644806
EPI_ISL_644807
EPI_ISL_644808
EPI_ISL_644809
EPI_ISL_644810
EPI_ISL_644811
EPI_ISL_644812
EPI_ISL_644813
EPI_ISL_644814
EPI_ISL_644815
EPI_ISL_644816
EPI_ISL_644817
EPI_ISL_644818
EPI_ISL_644819
EPI_ISL_644820
EPI_ISL_644821
EPI_ISL_644822The sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not available
EPI_ISL_647970
EPI_ISL_647971
EPI_ISL_647972
EPI_ISL_647973
EPI_ISL_647974
EPI_ISL_647975
EPI_ISL_647976
EPI_ISL_647977
EPI_ISL_647978
EPI_ISL_647979
EPI_ISL_647980
EPI_ISL_647981
EPI_ISL_647982
EPI_ISL_647983
EPI_ISL_647984

Download all results


GISAID data provided on this website is subject to GISAID’s Terms and Conditions | Privacy policy of University of Turin.