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Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Oct 25 07:18:47 2020 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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United Arab Emirates

Number of isolates sequences available: 247

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
EPI_ISL_435119
EPI_ISL_435120
EPI_ISL_435121
EPI_ISL_435122
EPI_ISL_435123
EPI_ISL_435124
EPI_ISL_435125
EPI_ISL_435126
EPI_ISL_435127
EPI_ISL_435128
EPI_ISL_435129
EPI_ISL_435130
EPI_ISL_435131
EPI_ISL_435132
EPI_ISL_435133
EPI_ISL_435134
EPI_ISL_435135
EPI_ISL_435136
EPI_ISL_435137
EPI_ISL_435138
EPI_ISL_435139
EPI_ISL_435140
EPI_ISL_435141
EPI_ISL_435142
EPI_ISL_435143
EPI_ISL_463740
EPI_ISL_469276
EPI_ISL_469277
EPI_ISL_469278
EPI_ISL_469279
EPI_ISL_469280
EPI_ISL_469281
EPI_ISL_520663
EPI_ISL_520664
EPI_ISL_520665
EPI_ISL_520666
EPI_ISL_520667
EPI_ISL_520668
EPI_ISL_520669
EPI_ISL_520670
EPI_ISL_520671
EPI_ISL_520672
EPI_ISL_520673
EPI_ISL_520674
EPI_ISL_520675
EPI_ISL_520676
EPI_ISL_520677
EPI_ISL_520678
EPI_ISL_520679
EPI_ISL_520680
EPI_ISL_520681
EPI_ISL_520682
EPI_ISL_520683
EPI_ISL_520684
EPI_ISL_520685
EPI_ISL_520686
EPI_ISL_520687
EPI_ISL_520688
EPI_ISL_520689
EPI_ISL_520690
EPI_ISL_520691
EPI_ISL_520692
EPI_ISL_520693
EPI_ISL_520694
EPI_ISL_520695
EPI_ISL_520696
EPI_ISL_520697
EPI_ISL_520698
EPI_ISL_520699
EPI_ISL_520700
EPI_ISL_520701
EPI_ISL_520702
EPI_ISL_520703
EPI_ISL_520704
EPI_ISL_520705
EPI_ISL_520706
EPI_ISL_520707
EPI_ISL_520708
EPI_ISL_520709
EPI_ISL_520710
EPI_ISL_520711
EPI_ISL_520712
EPI_ISL_520713
EPI_ISL_520714
EPI_ISL_520715
EPI_ISL_520716
EPI_ISL_520717
EPI_ISL_520718
EPI_ISL_520719
EPI_ISL_520720
EPI_ISL_520721
EPI_ISL_520722
EPI_ISL_520723
EPI_ISL_520724
EPI_ISL_520725
EPI_ISL_520726
EPI_ISL_520727
EPI_ISL_520728
EPI_ISL_520729
EPI_ISL_520730
EPI_ISL_520731
EPI_ISL_520732
EPI_ISL_520733
EPI_ISL_520734
EPI_ISL_520735
EPI_ISL_520736
EPI_ISL_520737
EPI_ISL_520738
EPI_ISL_520739
EPI_ISL_520740
EPI_ISL_520741
EPI_ISL_520742
EPI_ISL_520743
EPI_ISL_520744
EPI_ISL_523952
EPI_ISL_523953
EPI_ISL_582125
EPI_ISL_582126
EPI_ISL_582606
EPI_ISL_582607
EPI_ISL_582608
EPI_ISL_582609
EPI_ISL_582610
EPI_ISL_582611
EPI_ISL_582612
EPI_ISL_582613
EPI_ISL_582614
EPI_ISL_582615
EPI_ISL_582616
EPI_ISL_582617
EPI_ISL_582618
EPI_ISL_582619
EPI_ISL_582620
EPI_ISL_582621
EPI_ISL_582622
EPI_ISL_582623
EPI_ISL_582624
EPI_ISL_582625
EPI_ISL_582626
EPI_ISL_582627
EPI_ISL_582628
EPI_ISL_582629
EPI_ISL_582630
EPI_ISL_582631
EPI_ISL_582632
EPI_ISL_582633
EPI_ISL_582634
EPI_ISL_582635
EPI_ISL_582636
EPI_ISL_582637
EPI_ISL_582638
EPI_ISL_582639
EPI_ISL_582640
EPI_ISL_582641
EPI_ISL_582642
EPI_ISL_582643
EPI_ISL_582644
EPI_ISL_582645
EPI_ISL_582646
EPI_ISL_582647
EPI_ISL_582648
EPI_ISL_582649
EPI_ISL_582650
EPI_ISL_582651
EPI_ISL_582652
EPI_ISL_582653
EPI_ISL_582654
EPI_ISL_582655
EPI_ISL_582656
EPI_ISL_582657
EPI_ISL_582658
EPI_ISL_582659
EPI_ISL_582660
EPI_ISL_582661
EPI_ISL_582662
EPI_ISL_582663
EPI_ISL_582664
EPI_ISL_582665
EPI_ISL_582666
EPI_ISL_582667
EPI_ISL_582668
EPI_ISL_582669
EPI_ISL_582670
EPI_ISL_582671
EPI_ISL_582672
EPI_ISL_582673
EPI_ISL_582674
EPI_ISL_582675
EPI_ISL_582676
EPI_ISL_582677
EPI_ISL_582678
EPI_ISL_582679
EPI_ISL_582680
EPI_ISL_582681
EPI_ISL_582682
EPI_ISL_582683
EPI_ISL_582684
EPI_ISL_582685
EPI_ISL_582686
EPI_ISL_582687
EPI_ISL_582688
EPI_ISL_582689
EPI_ISL_582690
EPI_ISL_582691
EPI_ISL_528538Abu Dhabi
EPI_ISL_528686Abu Dhabi
EPI_ISL_528687Abu Dhabi
EPI_ISL_528688Abu Dhabi
EPI_ISL_528689Abu Dhabi
EPI_ISL_528690Abu Dhabi
EPI_ISL_528691Abu Dhabi
EPI_ISL_528692Abu Dhabi
EPI_ISL_528693Abu Dhabi
EPI_ISL_528697Abu Dhabi
EPI_ISL_528698Abu Dhabi
EPI_ISL_528699Abu Dhabi
EPI_ISL_528700Abu Dhabi
EPI_ISL_528701Abu Dhabi
EPI_ISL_528704Abu Dhabi
EPI_ISL_528705Abu Dhabi
EPI_ISL_528706Abu Dhabi
EPI_ISL_528707Abu Dhabi
EPI_ISL_528708Abu Dhabi
EPI_ISL_528709Abu Dhabi
EPI_ISL_528710Abu Dhabi
EPI_ISL_528711Abu Dhabi
EPI_ISL_528712Abu Dhabi
EPI_ISL_528713Abu Dhabi
EPI_ISL_528714Abu Dhabi
EPI_ISL_528715Abu Dhabi
EPI_ISL_528716Abu Dhabi
EPI_ISL_528717Abu Dhabi
EPI_ISL_528718Abu Dhabi
EPI_ISL_528719Abu Dhabi
EPI_ISL_528720Abu Dhabi
EPI_ISL_528721Abu Dhabi
EPI_ISL_528694Dubai
EPI_ISL_528695Dubai
EPI_ISL_528696Dubai
EPI_ISL_528702Dubai
EPI_ISL_548966Dubai
EPI_ISL_548967Dubai
EPI_ISL_548968Dubai
EPI_ISL_548969Dubai
EPI_ISL_548970Dubai
EPI_ISL_548971Dubai
EPI_ISL_528703Sharja

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