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Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Jan 10 05:32:46 2021 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Turkey

Number of isolates sequences available: 345

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
Turkey/6224-Ankara1034/2020 EPI_ISL_4174132020-03-17
EPI_ISL_460617
EPI_ISL_460618
EPI_ISL_460619
EPI_ISL_468066
EPI_ISL_478669
EPI_ISL_478670
EPI_ISL_613459
EPI_ISL_613460
EPI_ISL_613461
EPI_ISL_613462
EPI_ISL_435057Adıyaman
Turkey/HSGM-4236/2020 EPI_ISL_429866Afyon2020-03-16
EPI_ISL_437327Agri
Turkey/HSGM-8964/2020 EPI_ISL_428723Aksaray2020-03-22
Turkey/HSGM-5516/2020 EPI_ISL_428713Ankara2020-03-18
Turkey/HSGM-5711/2020 EPI_ISL_428716Ankara2020-03-18
Turkey/HSGM-8001/2020 EPI_ISL_428720Ankara2020-03-21
Turkey/HSGM-8003/2020 EPI_ISL_428721Ankara2020-03-21
Turkey/HSGM-8968/2020 EPI_ISL_429861Ankara2020-03-22
Turkey/HSGM-8970/2020 EPI_ISL_429862Ankara2020-03-22
Turkey/HSGM-10241/2020 EPI_ISL_429871Ankara2020-03-23
EPI_ISL_437308Ankara
EPI_ISL_437309Ankara
EPI_ISL_437310Ankara
EPI_ISL_437311Ankara
EPI_ISL_437314Ankara
EPI_ISL_437315Ankara
EPI_ISL_437317Ankara
EPI_ISL_437318Ankara
EPI_ISL_437322Ankara
EPI_ISL_437329Ankara
EPI_ISL_437331Ankara
EPI_ISL_437333Ankara
EPI_ISL_437334Ankara
EPI_ISL_636969Ankara
EPI_ISL_636970Ankara
EPI_ISL_636971Ankara
EPI_ISL_730567Ankara
EPI_ISL_730568Ankara
EPI_ISL_730569Ankara
EPI_ISL_730570Ankara
EPI_ISL_730571Ankara
EPI_ISL_730572Ankara
EPI_ISL_730573Ankara
EPI_ISL_730574Ankara
EPI_ISL_730575Ankara
EPI_ISL_730576Ankara
EPI_ISL_730577Ankara
EPI_ISL_730620Ankara
Turkey/HSGM-8010/2020 EPI_ISL_428722Balikesir2020-03-22
Turkey/HSGM-4505/2020 EPI_ISL_429867Balikesir2020-03-17
EPI_ISL_510533Bursa
EPI_ISL_510534Bursa
Turkey/HSGM-8992/2020 EPI_ISL_429865Canakkale2020-03-18
EPI_ISL_437316Denizli
EPI_ISL_437335Denizli
EPI_ISL_707936Denizli
EPI_ISL_707937Denizli
EPI_ISL_707938Denizli
EPI_ISL_707939Denizli
EPI_ISL_708184Denizli
EPI_ISL_708185Denizli
EPI_ISL_708186Denizli
EPI_ISL_708188Denizli
EPI_ISL_708189Denizli
EPI_ISL_708190Denizli
EPI_ISL_708191Denizli
EPI_ISL_708192Denizli
EPI_ISL_708193Denizli
EPI_ISL_708194Denizli
EPI_ISL_708195Denizli
Turkey/HSGM-4598/2020 EPI_ISL_429868Eskisehir2020-03-17
Turkey/GLAB-CoV008/2020 EPI_ISL_427391Istanbul2020-04-13
Turkey/GLAB-CoV012/2020 EPI_ISL_428346Istanbul2020-04-17
Turkey/GLAB-CoV013/2020 EPI_ISL_428368Istanbul2020-04-16
EPI_ISL_437320Istanbul
EPI_ISL_437321Istanbul
EPI_ISL_437323Istanbul
EPI_ISL_437324Istanbul
EPI_ISL_437325Istanbul
EPI_ISL_437326Istanbul
EPI_ISL_437332Istanbul
EPI_ISL_457824Istanbul
EPI_ISL_480228Istanbul
EPI_ISL_480229Istanbul
EPI_ISL_480230Istanbul
EPI_ISL_480231Istanbul
EPI_ISL_480232Istanbul
EPI_ISL_480233Istanbul
EPI_ISL_480234Istanbul
EPI_ISL_480235Istanbul
EPI_ISL_480236Istanbul
EPI_ISL_480237Istanbul
EPI_ISL_480238Istanbul
EPI_ISL_480239Istanbul
EPI_ISL_480240Istanbul
EPI_ISL_480241Istanbul
EPI_ISL_480242Istanbul
EPI_ISL_480243Istanbul
EPI_ISL_480244Istanbul
EPI_ISL_480245Istanbul
EPI_ISL_480246Istanbul
EPI_ISL_480247Istanbul
EPI_ISL_480248Istanbul
EPI_ISL_480249Istanbul
EPI_ISL_480250Istanbul
EPI_ISL_480251Istanbul
EPI_ISL_480252Istanbul
EPI_ISL_480253Istanbul
EPI_ISL_480254Istanbul
EPI_ISL_480255Istanbul
EPI_ISL_480256Istanbul
EPI_ISL_480257Istanbul
EPI_ISL_480258Istanbul
EPI_ISL_480259Istanbul
EPI_ISL_480260Istanbul
EPI_ISL_480261Istanbul
EPI_ISL_480262Istanbul
EPI_ISL_480263Istanbul
EPI_ISL_480264Istanbul
EPI_ISL_480265Istanbul
EPI_ISL_480266Istanbul
EPI_ISL_480267Istanbul
EPI_ISL_480268Istanbul
EPI_ISL_480269Istanbul
EPI_ISL_480270Istanbul
EPI_ISL_480271Istanbul
EPI_ISL_480272Istanbul
EPI_ISL_480273Istanbul
EPI_ISL_480274Istanbul
EPI_ISL_480275Istanbul
EPI_ISL_480276Istanbul
EPI_ISL_480277Istanbul
EPI_ISL_480278Istanbul
EPI_ISL_480279Istanbul
EPI_ISL_480280Istanbul
EPI_ISL_480281Istanbul
EPI_ISL_480282Istanbul
EPI_ISL_480283Istanbul
EPI_ISL_480284Istanbul
EPI_ISL_480285Istanbul
EPI_ISL_480286Istanbul
EPI_ISL_480287Istanbul
EPI_ISL_480288Istanbul
EPI_ISL_480289Istanbul
EPI_ISL_480290Istanbul
EPI_ISL_480291Istanbul
EPI_ISL_480292Istanbul
EPI_ISL_509412Istanbul
EPI_ISL_509413Istanbul
EPI_ISL_509414Istanbul
EPI_ISL_509415Istanbul
EPI_ISL_509416Istanbul
EPI_ISL_509417Istanbul
EPI_ISL_735259Istanbul
EPI_ISL_735260Istanbul
EPI_ISL_735261Istanbul
EPI_ISL_735262Istanbul
EPI_ISL_735263Istanbul
EPI_ISL_735264Istanbul
EPI_ISL_735265Istanbul
EPI_ISL_735266Istanbul
EPI_ISL_735267Istanbul
EPI_ISL_735268Istanbul
EPI_ISL_735269Istanbul
EPI_ISL_735270Istanbul
EPI_ISL_735271Istanbul
EPI_ISL_735272Istanbul
EPI_ISL_735273Istanbul
EPI_ISL_735274Istanbul
EPI_ISL_735275Istanbul
EPI_ISL_735276Istanbul
EPI_ISL_735277Istanbul
EPI_ISL_735278Istanbul
EPI_ISL_735279Istanbul
EPI_ISL_735280Istanbul
EPI_ISL_735281Istanbul
EPI_ISL_735282Istanbul
EPI_ISL_735283Istanbul
EPI_ISL_735284Istanbul
EPI_ISL_735285Istanbul
EPI_ISL_735286Istanbul
EPI_ISL_735287Istanbul
EPI_ISL_735288Istanbul
EPI_ISL_735289Istanbul
EPI_ISL_735290Istanbul
EPI_ISL_735291Istanbul
EPI_ISL_735292Istanbul
EPI_ISL_735293Istanbul
EPI_ISL_735294Istanbul
EPI_ISL_735295Istanbul
EPI_ISL_735296Istanbul
EPI_ISL_735297Istanbul
EPI_ISL_735298Istanbul
EPI_ISL_735299Istanbul
EPI_ISL_735300Istanbul
EPI_ISL_735301Istanbul
EPI_ISL_735302Istanbul
EPI_ISL_735303Istanbul
EPI_ISL_735304Istanbul
EPI_ISL_735305Istanbul
EPI_ISL_735306Istanbul
EPI_ISL_735307Istanbul
EPI_ISL_735308Istanbul
EPI_ISL_735309Istanbul
EPI_ISL_735310Istanbul
EPI_ISL_735311Istanbul
EPI_ISL_735312Istanbul
EPI_ISL_735313Istanbul
EPI_ISL_735314Istanbul
EPI_ISL_735315Istanbul
EPI_ISL_735316Istanbul
EPI_ISL_735317Istanbul
EPI_ISL_735318Istanbul
EPI_ISL_735319Istanbul
EPI_ISL_735320Istanbul
EPI_ISL_735321Istanbul
EPI_ISL_735322Istanbul
EPI_ISL_735323Istanbul
EPI_ISL_735324Istanbul
EPI_ISL_735325Istanbul
EPI_ISL_735326Istanbul
EPI_ISL_735327Istanbul
EPI_ISL_735328Istanbul
EPI_ISL_735329Istanbul
EPI_ISL_735330Istanbul
EPI_ISL_735331Istanbul
EPI_ISL_735332Istanbul
EPI_ISL_735333Istanbul
EPI_ISL_735334Istanbul
EPI_ISL_735335Istanbul
EPI_ISL_735336Istanbul
EPI_ISL_735337Istanbul
EPI_ISL_735338Istanbul
EPI_ISL_735339Istanbul
EPI_ISL_735340Istanbul
EPI_ISL_735341Istanbul
EPI_ISL_735342Istanbul
EPI_ISL_735343Istanbul
EPI_ISL_735344Istanbul
EPI_ISL_735345Istanbul
EPI_ISL_735346Istanbul
EPI_ISL_735347Istanbul
EPI_ISL_735348Istanbul
EPI_ISL_735349Istanbul
EPI_ISL_735350Istanbul
EPI_ISL_735351Istanbul
EPI_ISL_735352Istanbul
EPI_ISL_735353Istanbul
EPI_ISL_735354Istanbul
EPI_ISL_735355Istanbul
EPI_ISL_735356Istanbul
EPI_ISL_735357Istanbul
EPI_ISL_735358Istanbul
EPI_ISL_735359Istanbul
EPI_ISL_735360Istanbul
EPI_ISL_735361Istanbul
EPI_ISL_735362Istanbul
EPI_ISL_735363Istanbul
EPI_ISL_735364Istanbul
EPI_ISL_735365Istanbul
EPI_ISL_735366Istanbul
EPI_ISL_735367Istanbul
EPI_ISL_735368Istanbul
EPI_ISL_735369Istanbul
EPI_ISL_735370Istanbul
EPI_ISL_735371Istanbul
EPI_ISL_735372Istanbul
EPI_ISL_735373Istanbul
EPI_ISL_735434Istanbul
EPI_ISL_735435Istanbul
Turkey/HSGM-4706/2020 EPI_ISL_428712Karaman2020-03-17
EPI_ISL_495411Kars Province
EPI_ISL_495412Kars Province
EPI_ISL_495413Kars Province
EPI_ISL_495414Kars Province
EPI_ISL_495415Kars Province
EPI_ISL_495416Kars Province
EPI_ISL_495417Kars Province
EPI_ISL_495418Kars Province
EPI_ISL_495419Kars Province
EPI_ISL_495420Kars Province
EPI_ISL_495421Kars Province
EPI_ISL_495422Kars Province
EPI_ISL_495423Kars Province
EPI_ISL_495424Kars Province
EPI_ISL_495425Kars Province
EPI_ISL_495426Kars Province
EPI_ISL_495427Kars Province
EPI_ISL_495428Kars Province
EPI_ISL_495429Kars Province
EPI_ISL_495430Kars Province
EPI_ISL_495431Kars Province
EPI_ISL_495432Kars Province
EPI_ISL_495433Kars Province
EPI_ISL_495434Kars Province
EPI_ISL_495435Kars Province
EPI_ISL_495436Kars Province
EPI_ISL_495437Kars Province
EPI_ISL_495438Kars Province
EPI_ISL_495439Kars Province
EPI_ISL_495440Kars Province
EPI_ISL_495441Kars Province
EPI_ISL_495442Kars Province
EPI_ISL_495443Kars Province
EPI_ISL_495444Kars Province
EPI_ISL_495445Kars Province
EPI_ISL_495446Kars Province
EPI_ISL_495447Kars Province
EPI_ISL_495448Kars Province
EPI_ISL_495449Kars Province
EPI_ISL_495450Kars Province
EPI_ISL_495451Kars Province
EPI_ISL_495452Kars Province
EPI_ISL_495453Kars Province
EPI_ISL_495454Kars Province
EPI_ISL_495455Kars Province
EPI_ISL_495456Kars Province
EPI_ISL_495457Kars Province
Turkey/HSGM-5602/2020 EPI_ISL_428714Kastamonu2020-03-18
Turkey/ERAGEM-001/2020 EPI_ISL_424366Kayseri2020-03-17
Turkey/HSGM-5769/2020 EPI_ISL_428717Kocaeli2020-03-19
Turkey/HSGM-5770/2020 EPI_ISL_428718Kocaeli2020-03-19
Turkey/HSGM-11518/2020 EPI_ISL_429872Kocaeli2020-03-25
Turkey/HSGM-11520/2020 EPI_ISL_429873Kocaeli2020-03-23
EPI_ISL_437305Kocaeli
EPI_ISL_437306Kocaeli
EPI_ISL_437312Kocaeli
EPI_ISL_437313Kocaeli
EPI_ISL_437319Kocaeli
EPI_ISL_476832Kocaeli
Turkey/HSGM-4701/2020 EPI_ISL_429869Konya2020-03-17
EPI_ISL_437307Mardin
EPI_ISL_455719Mardin
Turkey/HSGM-5624/2020 EPI_ISL_428715Nevsehir2020-03-18
EPI_ISL_437304Nevsehir
Turkey/HSGM-8975/2020 EPI_ISL_429863Sakarya2020-03-22
Turkey/HSGM-8979/2020 EPI_ISL_429864Sakarya2020-03-22
Turkey/HSGM-8990/2020 EPI_ISL_429870Sakarya2020-03-22
EPI_ISL_491476Sakarya
EPI_ISL_500716Sakarya
Turkey/HSGM-7718/2020 EPI_ISL_428719Siirt2020-03-21
EPI_ISL_437328Tekirdag
EPI_ISL_437330Tokat

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