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Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Oct 25 07:18:47 2020 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Turkey

Number of isolates sequences available: 194

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
Turkey/6224-Ankara1034/2020 EPI_ISL_4174132020-03-17
EPI_ISL_460617
EPI_ISL_460618
EPI_ISL_460619
EPI_ISL_468066
EPI_ISL_478669
EPI_ISL_478670
EPI_ISL_435057Adıyaman
Turkey/HSGM-4236/2020 EPI_ISL_429866Afyon2020-03-16
EPI_ISL_437327Agri
Turkey/HSGM-8964/2020 EPI_ISL_428723Aksaray2020-03-22
Turkey/HSGM-5516/2020 EPI_ISL_428713Ankara2020-03-18
Turkey/HSGM-5711/2020 EPI_ISL_428716Ankara2020-03-18
Turkey/HSGM-8001/2020 EPI_ISL_428720Ankara2020-03-21
Turkey/HSGM-8003/2020 EPI_ISL_428721Ankara2020-03-21
Turkey/HSGM-8968/2020 EPI_ISL_429861Ankara2020-03-22
Turkey/HSGM-8970/2020 EPI_ISL_429862Ankara2020-03-22
Turkey/HSGM-10241/2020 EPI_ISL_429871Ankara2020-03-23
EPI_ISL_437308Ankara
EPI_ISL_437309Ankara
EPI_ISL_437310Ankara
EPI_ISL_437311Ankara
EPI_ISL_437314Ankara
EPI_ISL_437315Ankara
EPI_ISL_437317Ankara
EPI_ISL_437318Ankara
EPI_ISL_437322Ankara
EPI_ISL_437329Ankara
EPI_ISL_437331Ankara
EPI_ISL_437333Ankara
EPI_ISL_437334Ankara
Turkey/HSGM-8010/2020 EPI_ISL_428722Balikesir2020-03-22
Turkey/HSGM-4505/2020 EPI_ISL_429867Balikesir2020-03-17
EPI_ISL_510533Bursa
EPI_ISL_510534Bursa
Turkey/HSGM-8992/2020 EPI_ISL_429865Canakkale2020-03-18
EPI_ISL_437316Denizli
EPI_ISL_437335Denizli
Turkey/HSGM-4598/2020 EPI_ISL_429868Eskisehir2020-03-17
Turkey/GLAB-CoV008/2020 EPI_ISL_427391Istanbul2020-04-13
Turkey/GLAB-CoV012/2020 EPI_ISL_428346Istanbul2020-04-17
Turkey/GLAB-CoV013/2020 EPI_ISL_428368Istanbul2020-04-16
EPI_ISL_437320Istanbul
EPI_ISL_437321Istanbul
EPI_ISL_437323Istanbul
EPI_ISL_437324Istanbul
EPI_ISL_437325Istanbul
EPI_ISL_437326Istanbul
EPI_ISL_437332Istanbul
EPI_ISL_457824Istanbul
EPI_ISL_480228Istanbul
EPI_ISL_480229Istanbul
EPI_ISL_480230Istanbul
EPI_ISL_480231Istanbul
EPI_ISL_480232Istanbul
EPI_ISL_480233Istanbul
EPI_ISL_480234Istanbul
EPI_ISL_480235Istanbul
EPI_ISL_480236Istanbul
EPI_ISL_480237Istanbul
EPI_ISL_480238Istanbul
EPI_ISL_480239Istanbul
EPI_ISL_480240Istanbul
EPI_ISL_480241Istanbul
EPI_ISL_480242Istanbul
EPI_ISL_480243Istanbul
EPI_ISL_480244Istanbul
EPI_ISL_480245Istanbul
EPI_ISL_480246Istanbul
EPI_ISL_480247Istanbul
EPI_ISL_480248Istanbul
EPI_ISL_480249Istanbul
EPI_ISL_480250Istanbul
EPI_ISL_480251Istanbul
EPI_ISL_480252Istanbul
EPI_ISL_480253Istanbul
EPI_ISL_480254Istanbul
EPI_ISL_480255Istanbul
EPI_ISL_480256Istanbul
EPI_ISL_480257Istanbul
EPI_ISL_480258Istanbul
EPI_ISL_480259Istanbul
EPI_ISL_480260Istanbul
EPI_ISL_480261Istanbul
EPI_ISL_480262Istanbul
EPI_ISL_480263Istanbul
EPI_ISL_480264Istanbul
EPI_ISL_480265Istanbul
EPI_ISL_480266Istanbul
EPI_ISL_480267Istanbul
EPI_ISL_480268Istanbul
EPI_ISL_480269Istanbul
EPI_ISL_480270Istanbul
EPI_ISL_480271Istanbul
EPI_ISL_480272Istanbul
EPI_ISL_480273Istanbul
EPI_ISL_480274Istanbul
EPI_ISL_480275Istanbul
EPI_ISL_480276Istanbul
EPI_ISL_480277Istanbul
EPI_ISL_480278Istanbul
EPI_ISL_480279Istanbul
EPI_ISL_480280Istanbul
EPI_ISL_480281Istanbul
EPI_ISL_480282Istanbul
EPI_ISL_480283Istanbul
EPI_ISL_480284Istanbul
EPI_ISL_480285Istanbul
EPI_ISL_480286Istanbul
EPI_ISL_480287Istanbul
EPI_ISL_480288Istanbul
EPI_ISL_480289Istanbul
EPI_ISL_480290Istanbul
EPI_ISL_480291Istanbul
EPI_ISL_480292Istanbul
EPI_ISL_509412Istanbul
EPI_ISL_509413Istanbul
EPI_ISL_509414Istanbul
EPI_ISL_509415Istanbul
EPI_ISL_509416Istanbul
EPI_ISL_509417Istanbul
Turkey/HSGM-4706/2020 EPI_ISL_428712Karaman2020-03-17
EPI_ISL_495411Kars Province
EPI_ISL_495412Kars Province
EPI_ISL_495413Kars Province
EPI_ISL_495414Kars Province
EPI_ISL_495415Kars Province
EPI_ISL_495416Kars Province
EPI_ISL_495417Kars Province
EPI_ISL_495418Kars Province
EPI_ISL_495419Kars Province
EPI_ISL_495420Kars Province
EPI_ISL_495421Kars Province
EPI_ISL_495422Kars Province
EPI_ISL_495423Kars Province
EPI_ISL_495424Kars Province
EPI_ISL_495425Kars Province
EPI_ISL_495426Kars Province
EPI_ISL_495427Kars Province
EPI_ISL_495428Kars Province
EPI_ISL_495429Kars Province
EPI_ISL_495430Kars Province
EPI_ISL_495431Kars Province
EPI_ISL_495432Kars Province
EPI_ISL_495433Kars Province
EPI_ISL_495434Kars Province
EPI_ISL_495435Kars Province
EPI_ISL_495436Kars Province
EPI_ISL_495437Kars Province
EPI_ISL_495438Kars Province
EPI_ISL_495439Kars Province
EPI_ISL_495440Kars Province
EPI_ISL_495441Kars Province
EPI_ISL_495442Kars Province
EPI_ISL_495443Kars Province
EPI_ISL_495444Kars Province
EPI_ISL_495445Kars Province
EPI_ISL_495446Kars Province
EPI_ISL_495447Kars Province
EPI_ISL_495448Kars Province
EPI_ISL_495449Kars Province
EPI_ISL_495450Kars Province
EPI_ISL_495451Kars Province
EPI_ISL_495452Kars Province
EPI_ISL_495453Kars Province
EPI_ISL_495454Kars Province
EPI_ISL_495455Kars Province
EPI_ISL_495456Kars Province
EPI_ISL_495457Kars Province
Turkey/HSGM-5602/2020 EPI_ISL_428714Kastamonu2020-03-18
Turkey/ERAGEM-001/2020 EPI_ISL_424366Kayseri2020-03-17
Turkey/HSGM-5769/2020 EPI_ISL_428717Kocaeli2020-03-19
Turkey/HSGM-5770/2020 EPI_ISL_428718Kocaeli2020-03-19
Turkey/HSGM-11518/2020 EPI_ISL_429872Kocaeli2020-03-25
Turkey/HSGM-11520/2020 EPI_ISL_429873Kocaeli2020-03-23
EPI_ISL_437305Kocaeli
EPI_ISL_437306Kocaeli
EPI_ISL_437312Kocaeli
EPI_ISL_437313Kocaeli
EPI_ISL_437319Kocaeli
EPI_ISL_476832Kocaeli
Turkey/HSGM-4701/2020 EPI_ISL_429869Konya2020-03-17
EPI_ISL_437307Mardin
EPI_ISL_455719Mardin
Turkey/HSGM-5624/2020 EPI_ISL_428715Nevsehir2020-03-18
EPI_ISL_437304Nevsehir
Turkey/HSGM-8975/2020 EPI_ISL_429863Sakarya2020-03-22
Turkey/HSGM-8979/2020 EPI_ISL_429864Sakarya2020-03-22
Turkey/HSGM-8990/2020 EPI_ISL_429870Sakarya2020-03-22
EPI_ISL_491476Sakarya
EPI_ISL_500716Sakarya
Turkey/HSGM-7718/2020 EPI_ISL_428719Siirt2020-03-21
EPI_ISL_437328Tekirdag
EPI_ISL_437330Tokat

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