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Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Jan 31 07:00:30 2021 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Taiwan

Number of isolates sequences available: 150

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
Taiwan/125/2020 EPI_ISL_4200822020-03-19
Taiwan/128/2020 EPI_ISL_4200832020-03-18
Taiwan/170/2020 EPI_ISL_4200842020-03-21
Taiwan/107/2020 EPI_ISL_4200852020-03-20
Taiwan/8/2020 EPI_ISL_4284882020-01-31
Taiwan/5/2020 EPI_ISL_4284892020-01-31
Taiwan/78/2020 EPI_ISL_4284902020-03-16
Taiwan/58/2020 EPI_ISL_4284912020-03-15
Taiwan/299/2020 EPI_ISL_4298822020-03-29
Taiwan/108/2020 EPI_ISL_4298832020-03-23
Taiwan/284/2020 EPI_ISL_4298842020-03-30
EPI_ISL_493208
EPI_ISL_494747
EPI_ISL_857314
Taiwan/2/2020 EPI_ISL_406031Kaohsiung2020-01-23
Taiwan/TSGH-08/2020 EPI_ISL_427395Keelung2020-03-23
Taiwan/TSGH-03/2020 EPI_ISL_426631New Taipei City2020-03-17
Taiwan/TSGH-04/2020 EPI_ISL_426632New Taipei City2020-03-17
Taiwan/TSGH-05/2020 EPI_ISL_427392New Taipei City2020-03-14
Taiwan/TSGH-07/2020 EPI_ISL_427394New Taipei City2020-03-22
Taiwan/TSGH-09/2020 EPI_ISL_427396New Taipei City2020-03-23
Taiwan/TSGH-11/2020 EPI_ISL_427398New Taipei City2020-03-25
Taiwan/TSGH-13/2020 EPI_ISL_428230New Taipei City2020-03-17
Taiwan/TSGH-14/2020 EPI_ISL_428231New Taipei City2020-03-24
EPI_ISL_436100New Taipei City
EPI_ISL_436101New Taipei City
EPI_ISL_436102New Taipei City
EPI_ISL_436103New Taipei City
EPI_ISL_436104New Taipei City
EPI_ISL_436106New Taipei City
EPI_ISL_436107New Taipei City
EPI_ISL_437336New Taipei City
EPI_ISL_447252New Taipei City
EPI_ISL_447255New Taipei City
EPI_ISL_447257New Taipei City
EPI_ISL_447592New Taipei City
EPI_ISL_447593New Taipei City
Taiwan/TSGH-02/2020 EPI_ISL_426630New Taipei city2020-03-17
EPI_ISL_493198Tainan
EPI_ISL_493199Tainan
EPI_ISL_493200Tainan
EPI_ISL_493201Tainan
EPI_ISL_493202Tainan
EPI_ISL_493203Tainan
EPI_ISL_493204Tainan
EPI_ISL_493205Tainan
EPI_ISL_493206Tainan
EPI_ISL_493207Tainan
Taiwan/NTU01/2020 EPI_ISL_408489Taipei2020-01-31
Taiwan/NTU02/2020 EPI_ISL_410218Taipei2020-02-05
Taiwan/3/2020 EPI_ISL_411926Taipei2020-01-24
Taiwan/4/2020 EPI_ISL_411927Taipei2020-01-28
Taiwan/NTU03/2020 EPI_ISL_413592Taipei2020-03-02
Taiwan/144/2020 EPI_ISL_421641Taipei2020-03-19
Taiwan/225/2020 EPI_ISL_421651Taipei2020-03-22
Taiwan/NTU04/2020 EPI_ISL_422407Taipei2020-03-04
Taiwan/NTU05/2020 EPI_ISL_422408Taipei2020-03-13
Taiwan/NTU06/2020 EPI_ISL_422409Taipei2020-03-13
Taiwan/NTU07/2020 EPI_ISL_422410Taipei2020-03-13
Taiwan/NTU08/2020 EPI_ISL_422411Taipei2020-03-14
Taiwan/NTU09/2020 EPI_ISL_422412Taipei2020-03-14
Taiwan/NTU11/2020 EPI_ISL_422413Taipei2020-03-16
Taiwan/NTU12/2020 EPI_ISL_422414Taipei2020-03-16
Taiwan/NTU13/2020 EPI_ISL_422415Taipei2020-03-17
Taiwan/NTU14/2020 EPI_ISL_422416Taipei2020-03-18
Taiwan/NTU15/2020 EPI_ISL_422417Taipei2020-03-18
Taiwan/NTU16/2020 EPI_ISL_422418Taipei2020-03-19
Taiwan/NTU17/2020 EPI_ISL_422419Taipei2020-03-19
Taiwan/NTU19/2020 EPI_ISL_422420Taipei2020-03-19
Taiwan/NTU20/2020 EPI_ISL_422421Taipei2020-03-19
Taiwan/NTU21/2020 EPI_ISL_422422Taipei2020-03-19
Taiwan/TSGH-01/2020 EPI_ISL_426629Taipei2020-02-07
Taiwan/TSGH-06/2020 EPI_ISL_427393Taipei2020-03-15
Taiwan/TSGH-10/2020 EPI_ISL_427397Taipei2020-03-24
EPI_ISL_428229Taipei
EPI_ISL_436099Taipei
EPI_ISL_436105Taipei
EPI_ISL_436108Taipei
EPI_ISL_447253Taipei
EPI_ISL_447254Taipei
EPI_ISL_447256Taipei
EPI_ISL_447591Taipei
EPI_ISL_447614Taipei
EPI_ISL_447615Taipei
EPI_ISL_447616Taipei
EPI_ISL_447617Taipei
EPI_ISL_447618Taipei
EPI_ISL_447619Taipei
EPI_ISL_447620Taipei
EPI_ISL_447621Taipei
EPI_ISL_447622Taipei
EPI_ISL_457726Taipei
EPI_ISL_457730Taipei
EPI_ISL_457733Taipei
EPI_ISL_458029Taipei
EPI_ISL_463007Taipei
EPI_ISL_534336Taipei
EPI_ISL_693302Taipei
EPI_ISL_693303Taipei
EPI_ISL_693304Taipei
EPI_ISL_693305Taipei
EPI_ISL_693306Taipei
EPI_ISL_738064Taipei
EPI_ISL_738065Taipei
EPI_ISL_740547Taipei
EPI_ISL_872591Taipei
EPI_ISL_872592Taipei
EPI_ISL_872593Taipei
EPI_ISL_872594Taipei
EPI_ISL_872595Taipei
EPI_ISL_872596Taipei
EPI_ISL_872597Taipei
EPI_ISL_872598Taipei
EPI_ISL_872599Taipei
Taiwan/CGMH-CGU-01/2020 EPI_ISL_411915Taoyuan2020-01-25
Taiwan/CGMH-CGU-03/2020 EPI_ISL_415741Taoyuan2020-02-26
Taiwan/CGMH-CGU-04/2020 EPI_ISL_415742Taoyuan2020-02-27
Taiwan/CGMH-CGU-05/2020 EPI_ISL_415743Taoyuan2020-02-27
Taiwan/CGMH-CGU-02/2020 EPI_ISL_417518Taoyuan2020-02-04
Taiwan/CGMH-CGU-06/2020 EPI_ISL_417519Taoyuan2020-03-05
Taiwan/CGMH-CGU-07/2020 EPI_ISL_417520Taoyuan2020-03-09
Taiwan/CGMH-CGU-08/2020 EPI_ISL_417521Taoyuan2020-03-10
Taiwan/CGMH-CGU-09/2020 EPI_ISL_417522Taoyuan2020-03-13
Taiwan/CGMH-CGU-10/2020 EPI_ISL_417523Taoyuan2020-03-13
Taiwan/CGMH-CGU-11/2020 EPI_ISL_417524Taoyuan2020-03-14
Taiwan/CGMH-CGU-12/2020 EPI_ISL_417525Taoyuan2020-03-14
Taiwan/CGMH-CGU-13/2020 EPI_ISL_424969Taoyuan2020-03-17
Taiwan/CGMH-CGU-14/2020 EPI_ISL_424970Taoyuan2020-03-17
Taiwan/CGMH-CGU-15/2020 EPI_ISL_424971Taoyuan2020-03-17
Taiwan/CGMH-CGU-16/2020 EPI_ISL_424972Taoyuan2020-03-16
Taiwan/CGMH-CGU-17/2020 EPI_ISL_424973Taoyuan2020-03-17
Taiwan/CGMH-CGU-18/2020 EPI_ISL_424974Taoyuan2020-03-18
Taiwan/CGMH-CGU-19/2020 EPI_ISL_424975Taoyuan2020-03-18
Taiwan/CGMH-CGU-20/2020 EPI_ISL_424978Taoyuan2020-03-18
EPI_ISL_444274Taoyuan
EPI_ISL_444275Taoyuan
EPI_ISL_444276Taoyuan
EPI_ISL_444277Taoyuan
EPI_ISL_444278Taoyuan
EPI_ISL_452178Taoyuan
EPI_ISL_452179Taoyuan
EPI_ISL_464092Taoyuan
EPI_ISL_464093Taoyuan
EPI_ISL_464094Taoyuan
EPI_ISL_660543Taoyuan
EPI_ISL_660544Taoyuan
EPI_ISL_660545Taoyuan
EPI_ISL_667807Taoyuan
EPI_ISL_667808Taoyuan
EPI_ISL_667809Taoyuan

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