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Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Jan 10 05:32:46 2021 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Serbia

Number of isolates sequences available: 126

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
EPI_ISL_450415The sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not available
EPI_ISL_450443The sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not available
EPI_ISL_454419The sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not available
EPI_ISL_482744
EPI_ISL_514425
EPI_ISL_514426
EPI_ISL_514427
EPI_ISL_514428
EPI_ISL_514429
EPI_ISL_514430
EPI_ISL_514431
EPI_ISL_661182Backa Palanka
EPI_ISL_676577Backa Topola
EPI_ISL_454795Cacak
EPI_ISL_455480Cacak
EPI_ISL_582525Cuprija
EPI_ISL_661189Kikinda
EPI_ISL_541651Kosovska Mitrovica
EPI_ISL_541655Kosovska Mitrovica
EPI_ISL_541657Kosovska Mitrovica
EPI_ISL_541658Kosovska Mitrovica
EPI_ISL_582530Kosovska Mitrovica
EPI_ISL_644565Kosovska Mitrovica
EPI_ISL_644566Kosovska Mitrovica
EPI_ISL_644567Kosovska Mitrovica
EPI_ISL_582524Kragujevac
EPI_ISL_437435Kraljevo
EPI_ISL_445086Kraljevo
EPI_ISL_445087Kraljevo
EPI_ISL_462435Kraljevo
EPI_ISL_462437Kraljevo
EPI_ISL_462438Kraljevo
EPI_ISL_541656Kraljevo
EPI_ISL_541660Kraljevo
EPI_ISL_541662Kraljevo
EPI_ISL_582531Kraljevo
EPI_ISL_582532Kraljevo
EPI_ISL_582533Kraljevo
EPI_ISL_582534Kraljevo
EPI_ISL_644568Kraljevo
EPI_ISL_644569Kraljevo
EPI_ISL_644570Kraljevo
EPI_ISL_644571Kraljevo
EPI_ISL_644572Kraljevo
EPI_ISL_644573Kraljevo
EPI_ISL_644574Kraljevo
EPI_ISL_644575Kraljevo
EPI_ISL_644576Kraljevo
EPI_ISL_644577Kraljevo
EPI_ISL_644578Kraljevo
EPI_ISL_582526Krusevac
EPI_ISL_582527Krusevac
EPI_ISL_582528Krusevac
EPI_ISL_582529Krusevac
EPI_ISL_437436Novi Pazar
EPI_ISL_541649Novi Pazar
EPI_ISL_541650Novi Pazar
EPI_ISL_541652Novi Pazar
EPI_ISL_541653Novi Pazar
EPI_ISL_541654Novi Pazar
EPI_ISL_541659Novi Pazar
EPI_ISL_541661Novi Pazar
EPI_ISL_644579Novi Pazar
EPI_ISL_644580Novi Pazar
EPI_ISL_644581Novi Pazar
EPI_ISL_462434Novi Sad
EPI_ISL_661180Novi Sad
EPI_ISL_661181Novi Sad
EPI_ISL_661183Novi Sad
EPI_ISL_661185Novi Sad
EPI_ISL_661187Novi Sad
EPI_ISL_661190Novi Sad
EPI_ISL_661191Novi Sad
EPI_ISL_661192Novi Sad
EPI_ISL_661194Novi Sad
EPI_ISL_661196Novi Sad
EPI_ISL_676578Novi Sad
EPI_ISL_676580Novi Sad
EPI_ISL_676582Novi Sad
EPI_ISL_676583Novi Sad
EPI_ISL_676584Novi Sad
EPI_ISL_676588Novi Sad
EPI_ISL_676590Novi Sad
EPI_ISL_676591Novi Sad
EPI_ISL_676592Novi Sad
EPI_ISL_676601Novi Sad
EPI_ISL_676602Novi Sad
EPI_ISL_676603Novi Sad
EPI_ISL_661184Pancevo
EPI_ISL_661188Pancevo
EPI_ISL_661200Pancevo
EPI_ISL_676576Pancevo
EPI_ISL_676586Pancevo
EPI_ISL_676594Pancevo
EPI_ISL_676600Pancevo
EPI_ISL_661193Ruma
EPI_ISL_678486Sabac
EPI_ISL_678487Sabac
EPI_ISL_678488Sabac
EPI_ISL_678489Sabac
EPI_ISL_678490Sabac
EPI_ISL_678491Sabac
EPI_ISL_678492Sabac
EPI_ISL_678493Sabac
EPI_ISL_661198Srbobran
EPI_ISL_676596Srbobran
EPI_ISL_676575Sremska Mitrovica
EPI_ISL_676579Sremska Mitrovica
EPI_ISL_676581Sremska Mitrovica
EPI_ISL_676574Subotica
EPI_ISL_676585Subotica
EPI_ISL_676589Subotica
EPI_ISL_676599Subotica
EPI_ISL_661179Suubotica
EPI_ISL_676597Titel
EPI_ISL_676598Titel
EPI_ISL_462436Uzice
EPI_ISL_644582Uzice
EPI_ISL_644583Uzice
EPI_ISL_661195Vrbas
EPI_ISL_661199Vrbas
EPI_ISL_661186Vrsac
EPI_ISL_661197Vrsac
EPI_ISL_676587Vrsac
EPI_ISL_676595Vrsac
EPI_ISL_676593Zrenjanin

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