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Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Oct 25 07:18:47 2020 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Saudi Arabia

Number of isolates sequences available: 562

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
SaudiArabia/SCDC-3321/2020 EPI_ISL_4165212020-03-10
SaudiArabia/SCDC-3324/2020 EPI_ISL_4165222020-03-10
EPI_ISL_489996
EPI_ISL_489997
EPI_ISL_489998
EPI_ISL_489999
EPI_ISL_490000
EPI_ISL_490001
EPI_ISL_490002
EPI_ISL_490003
EPI_ISL_490004
EPI_ISL_490005
EPI_ISL_490006
EPI_ISL_490007
EPI_ISL_490008
EPI_ISL_490009
EPI_ISL_490010
EPI_ISL_490011
EPI_ISL_490012
EPI_ISL_507010
EPI_ISL_507011
EPI_ISL_507012
EPI_ISL_507013
EPI_ISL_507014
EPI_ISL_507015
EPI_ISL_507016
EPI_ISL_507017
EPI_ISL_507018
EPI_ISL_507019
EPI_ISL_507020
EPI_ISL_507021
EPI_ISL_507022
EPI_ISL_507023
EPI_ISL_507024
EPI_ISL_507025
EPI_ISL_507026
EPI_ISL_507027
EPI_ISL_507028
EPI_ISL_507029
EPI_ISL_507030
EPI_ISL_507031
EPI_ISL_507032
EPI_ISL_507033
EPI_ISL_507034
EPI_ISL_507035
EPI_ISL_507036
EPI_ISL_507037
EPI_ISL_507038
EPI_ISL_437475Jeddah
EPI_ISL_437496Jeddah
EPI_ISL_437497Jeddah
EPI_ISL_437754Jeddah
EPI_ISL_437755Jeddah
EPI_ISL_437756Jeddah
EPI_ISL_437757Jeddah
EPI_ISL_437758Jeddah
EPI_ISL_437759Jeddah
EPI_ISL_437760Jeddah
EPI_ISL_469241Jeddah
EPI_ISL_469242Jeddah
EPI_ISL_469243Jeddah
EPI_ISL_469244Jeddah
EPI_ISL_469245Jeddah
EPI_ISL_469246Jeddah
EPI_ISL_469247Jeddah
EPI_ISL_469248Jeddah
EPI_ISL_469249Jeddah
EPI_ISL_469250Jeddah
EPI_ISL_469251Jeddah
EPI_ISL_469252Jeddah
EPI_ISL_512874Jeddah
EPI_ISL_512875Jeddah
EPI_ISL_512876Jeddah
EPI_ISL_512877Jeddah
EPI_ISL_512878Jeddah
EPI_ISL_512879Jeddah
EPI_ISL_512880Jeddah
EPI_ISL_512881Jeddah
EPI_ISL_512882Jeddah
EPI_ISL_512883Jeddah
EPI_ISL_512884Jeddah
EPI_ISL_512885Jeddah
EPI_ISL_512886Jeddah
EPI_ISL_512887Jeddah
EPI_ISL_512888Jeddah
EPI_ISL_512889Jeddah
EPI_ISL_512890Jeddah
EPI_ISL_512891Jeddah
EPI_ISL_512892Jeddah
EPI_ISL_512893Jeddah
EPI_ISL_512894Jeddah
EPI_ISL_512895Jeddah
EPI_ISL_512896Jeddah
EPI_ISL_512897Jeddah
EPI_ISL_512898Jeddah
EPI_ISL_512899Jeddah
EPI_ISL_512900Jeddah
EPI_ISL_512901Jeddah
EPI_ISL_512902Jeddah
EPI_ISL_512903Jeddah
EPI_ISL_512904Jeddah
EPI_ISL_512905Jeddah
EPI_ISL_512906Jeddah
EPI_ISL_512907Jeddah
EPI_ISL_512908Jeddah
EPI_ISL_512909Jeddah
EPI_ISL_512910Jeddah
EPI_ISL_512911Jeddah
EPI_ISL_512912Jeddah
EPI_ISL_512913Jeddah
EPI_ISL_512914Jeddah
EPI_ISL_512915Jeddah
EPI_ISL_512916Jeddah
EPI_ISL_512917Jeddah
EPI_ISL_512918Jeddah
EPI_ISL_512919Jeddah
EPI_ISL_512920Jeddah
EPI_ISL_512921Jeddah
EPI_ISL_512922Jeddah
EPI_ISL_512923Jeddah
EPI_ISL_512924Jeddah
EPI_ISL_512925Jeddah
EPI_ISL_512926Jeddah
EPI_ISL_512927Jeddah
EPI_ISL_512928Jeddah
EPI_ISL_512929Jeddah
EPI_ISL_512930Jeddah
EPI_ISL_512931Jeddah
EPI_ISL_512932Jeddah
EPI_ISL_512933Jeddah
EPI_ISL_512934Jeddah
EPI_ISL_512935Jeddah
EPI_ISL_512936Jeddah
EPI_ISL_512937Jeddah
EPI_ISL_512938Jeddah
EPI_ISL_512939Jeddah
EPI_ISL_512940Jeddah
EPI_ISL_512941Jeddah
EPI_ISL_512942Jeddah
EPI_ISL_512943Jeddah
EPI_ISL_512944Jeddah
EPI_ISL_512945Jeddah
EPI_ISL_512946Jeddah
EPI_ISL_512947Jeddah
EPI_ISL_512948Jeddah
EPI_ISL_512949Jeddah
EPI_ISL_512950Jeddah
EPI_ISL_512951Jeddah
EPI_ISL_512952Jeddah
EPI_ISL_512953Jeddah
EPI_ISL_512954Jeddah
EPI_ISL_512955Jeddah
EPI_ISL_512956Jeddah
EPI_ISL_512957Jeddah
EPI_ISL_512958Jeddah
EPI_ISL_512959Jeddah
EPI_ISL_512960Jeddah
EPI_ISL_512961Jeddah
EPI_ISL_512962Jeddah
EPI_ISL_512963Jeddah
EPI_ISL_512964Jeddah
EPI_ISL_512965Jeddah
EPI_ISL_512966Jeddah
EPI_ISL_512967Jeddah
EPI_ISL_512968Jeddah
EPI_ISL_512969Jeddah
EPI_ISL_512970Jeddah
EPI_ISL_512971Jeddah
EPI_ISL_512972Jeddah
EPI_ISL_512973Jeddah
EPI_ISL_512974Jeddah
EPI_ISL_512975Jeddah
EPI_ISL_512976Jeddah
EPI_ISL_512977Jeddah
EPI_ISL_512978Jeddah
EPI_ISL_512979Jeddah
EPI_ISL_512980Jeddah
EPI_ISL_512981Jeddah
EPI_ISL_512982Jeddah
EPI_ISL_512983Jeddah
EPI_ISL_512984Jeddah
EPI_ISL_512985Jeddah
EPI_ISL_512986Jeddah
EPI_ISL_512987Jeddah
EPI_ISL_512988Jeddah
EPI_ISL_512989Jeddah
EPI_ISL_512990Jeddah
EPI_ISL_512991Jeddah
EPI_ISL_512992Jeddah
EPI_ISL_512993Jeddah
EPI_ISL_512994Jeddah
EPI_ISL_512995Jeddah
EPI_ISL_512996Jeddah
EPI_ISL_512997Jeddah
EPI_ISL_512998Jeddah
EPI_ISL_512999Jeddah
EPI_ISL_513000Jeddah
EPI_ISL_513001Jeddah
EPI_ISL_513002Jeddah
EPI_ISL_513003Jeddah
EPI_ISL_513004Jeddah
EPI_ISL_513005Jeddah
EPI_ISL_513006Jeddah
EPI_ISL_513007Jeddah
EPI_ISL_513008Jeddah
EPI_ISL_513009Jeddah
EPI_ISL_513010Jeddah
EPI_ISL_513011Jeddah
EPI_ISL_513012Jeddah
EPI_ISL_513013Jeddah
EPI_ISL_513014Jeddah
EPI_ISL_513015Jeddah
EPI_ISL_513016Jeddah
EPI_ISL_513017Jeddah
EPI_ISL_513018Jeddah
EPI_ISL_513019Jeddah
EPI_ISL_513020Jeddah
EPI_ISL_513021Jeddah
EPI_ISL_513022Jeddah
EPI_ISL_513023Jeddah
EPI_ISL_513024Jeddah
EPI_ISL_513025Jeddah
EPI_ISL_513026Jeddah
EPI_ISL_513027Jeddah
EPI_ISL_513028Jeddah
EPI_ISL_513029Jeddah
EPI_ISL_513030Jeddah
EPI_ISL_513031Jeddah
EPI_ISL_513032Jeddah
EPI_ISL_513033Jeddah
EPI_ISL_513034Jeddah
EPI_ISL_513035Jeddah
EPI_ISL_513036Jeddah
EPI_ISL_513037Jeddah
EPI_ISL_513038Jeddah
EPI_ISL_513039Jeddah
EPI_ISL_513040Jeddah
EPI_ISL_513041Jeddah
EPI_ISL_513042Jeddah
EPI_ISL_513043Jeddah
EPI_ISL_513044Jeddah
EPI_ISL_513045Jeddah
EPI_ISL_513046Jeddah
EPI_ISL_513047Jeddah
EPI_ISL_513048Jeddah
EPI_ISL_513049Jeddah
EPI_ISL_513050Jeddah
EPI_ISL_513051Jeddah
EPI_ISL_513052Jeddah
EPI_ISL_513053Jeddah
EPI_ISL_513054Jeddah
EPI_ISL_513055Jeddah
EPI_ISL_513056Jeddah
EPI_ISL_513057Jeddah
EPI_ISL_513058Jeddah
EPI_ISL_513059Jeddah
EPI_ISL_513060Jeddah
EPI_ISL_513061Jeddah
EPI_ISL_513062Jeddah
EPI_ISL_513063Jeddah
EPI_ISL_513064Jeddah
EPI_ISL_513065Jeddah
EPI_ISL_513066Jeddah
EPI_ISL_513067Jeddah
EPI_ISL_513068Jeddah
EPI_ISL_513069Jeddah
EPI_ISL_513070Jeddah
EPI_ISL_513071Jeddah
EPI_ISL_513072Jeddah
EPI_ISL_437469Madinah
EPI_ISL_437470Madinah
EPI_ISL_437471Madinah
EPI_ISL_437472Madinah
EPI_ISL_437473Madinah
EPI_ISL_437474Madinah
EPI_ISL_437482Madinah
EPI_ISL_437483Madinah
EPI_ISL_437484Madinah
EPI_ISL_437485Madinah
EPI_ISL_437486Madinah
EPI_ISL_437487Madinah
EPI_ISL_437488Madinah
EPI_ISL_437489Madinah
EPI_ISL_437490Madinah
EPI_ISL_437491Madinah
EPI_ISL_437492Madinah
EPI_ISL_437493Madinah
EPI_ISL_437494Madinah
EPI_ISL_437495Madinah
EPI_ISL_437715Madinah
EPI_ISL_437716Madinah
EPI_ISL_437717Madinah
EPI_ISL_437733Madinah
EPI_ISL_437734Madinah
EPI_ISL_437735Madinah
EPI_ISL_437736Madinah
EPI_ISL_437737Madinah
EPI_ISL_437738Madinah
EPI_ISL_437739Madinah
EPI_ISL_437740Madinah
EPI_ISL_437741Madinah
EPI_ISL_437742Madinah
EPI_ISL_437743Madinah
EPI_ISL_437744Madinah
EPI_ISL_437745Madinah
EPI_ISL_437746Madinah
EPI_ISL_437747Madinah
EPI_ISL_437748Madinah
EPI_ISL_437749Madinah
EPI_ISL_437750Madinah
EPI_ISL_437751Madinah
EPI_ISL_437752Madinah
EPI_ISL_437753Madinah
EPI_ISL_513073Madinah
EPI_ISL_513074Madinah
EPI_ISL_513075Madinah
EPI_ISL_513076Madinah
EPI_ISL_513077Madinah
EPI_ISL_513078Madinah
EPI_ISL_513079Madinah
EPI_ISL_513080Madinah
EPI_ISL_513081Madinah
EPI_ISL_513082Madinah
EPI_ISL_513083Madinah
EPI_ISL_513084Madinah
EPI_ISL_513085Madinah
EPI_ISL_513086Madinah
EPI_ISL_513087Madinah
EPI_ISL_513088Madinah
EPI_ISL_513089Madinah
EPI_ISL_513090Madinah
EPI_ISL_513091Madinah
EPI_ISL_513092Madinah
EPI_ISL_513093Madinah
EPI_ISL_513094Madinah
EPI_ISL_513095Madinah
EPI_ISL_513096Madinah
EPI_ISL_513097Madinah
EPI_ISL_513098Madinah
EPI_ISL_513099Madinah
EPI_ISL_513100Madinah
EPI_ISL_513101Madinah
EPI_ISL_513102Madinah
EPI_ISL_513103Madinah
EPI_ISL_513104Madinah
EPI_ISL_513105Madinah
EPI_ISL_513106Madinah
EPI_ISL_513107Madinah
EPI_ISL_513108Madinah
EPI_ISL_513109Madinah
EPI_ISL_513110Madinah
EPI_ISL_513111Madinah
EPI_ISL_513112Madinah
EPI_ISL_513113Madinah
EPI_ISL_513114Madinah
EPI_ISL_513115Madinah
EPI_ISL_513116Madinah
EPI_ISL_513117Madinah
EPI_ISL_513118Madinah
EPI_ISL_513119Madinah
EPI_ISL_513120Madinah
EPI_ISL_513121Madinah
EPI_ISL_513122Madinah
EPI_ISL_513123Madinah
EPI_ISL_513124Madinah
EPI_ISL_513125Madinah
EPI_ISL_513126Madinah
EPI_ISL_513127Madinah
EPI_ISL_513128Madinah
EPI_ISL_513129Madinah
EPI_ISL_513130Madinah
EPI_ISL_513131Madinah
EPI_ISL_513132Madinah
EPI_ISL_513133Madinah
EPI_ISL_513134Madinah
EPI_ISL_513135Madinah
EPI_ISL_513136Madinah
EPI_ISL_513137Madinah
EPI_ISL_513138Madinah
EPI_ISL_513139Madinah
EPI_ISL_513140Madinah
EPI_ISL_513141Madinah
EPI_ISL_513142Madinah
EPI_ISL_513143Madinah
EPI_ISL_513144Madinah
EPI_ISL_513145Madinah
EPI_ISL_513146Madinah
EPI_ISL_513147Madinah
EPI_ISL_513148Madinah
EPI_ISL_513149Madinah
EPI_ISL_513150Madinah
EPI_ISL_513151Madinah
EPI_ISL_513152Madinah
EPI_ISL_513153Madinah
EPI_ISL_513154Madinah
EPI_ISL_513155Madinah
EPI_ISL_513156Madinah
EPI_ISL_513157Madinah
EPI_ISL_513158Madinah
EPI_ISL_513159Madinah
EPI_ISL_513160Madinah
EPI_ISL_513161Madinah
EPI_ISL_513162Madinah
EPI_ISL_513163Madinah
EPI_ISL_513164Madinah
EPI_ISL_513165Madinah
EPI_ISL_513166Madinah
EPI_ISL_513167Madinah
EPI_ISL_513168Madinah
EPI_ISL_513169Madinah
EPI_ISL_513170Madinah
EPI_ISL_513171Madinah
EPI_ISL_513172Madinah
EPI_ISL_513173Madinah
EPI_ISL_513174Madinah
EPI_ISL_513175Madinah
EPI_ISL_513176Madinah
EPI_ISL_513177Madinah
EPI_ISL_513178Madinah
EPI_ISL_513179Madinah
EPI_ISL_513180Madinah
EPI_ISL_513181Madinah
EPI_ISL_513182Madinah
EPI_ISL_513183Madinah
EPI_ISL_513184Madinah
EPI_ISL_513185Madinah
EPI_ISL_513186Madinah
EPI_ISL_513187Madinah
EPI_ISL_513188Madinah
EPI_ISL_513189Madinah
EPI_ISL_513190Madinah
EPI_ISL_513191Madinah
EPI_ISL_513192Madinah
EPI_ISL_513193Madinah
EPI_ISL_513194Madinah
EPI_ISL_513195Madinah
EPI_ISL_513196Madinah
EPI_ISL_513197Madinah
EPI_ISL_513198Madinah
EPI_ISL_513199Madinah
EPI_ISL_513200Madinah
EPI_ISL_513201Madinah
EPI_ISL_513202Madinah
EPI_ISL_513203Madinah
EPI_ISL_513204Madinah
EPI_ISL_513205Madinah
EPI_ISL_513206Madinah
EPI_ISL_513207Madinah
EPI_ISL_513208Madinah
EPI_ISL_513209Madinah
EPI_ISL_513210Madinah
EPI_ISL_513211Madinah
EPI_ISL_513212Madinah
EPI_ISL_513213Madinah
EPI_ISL_437459Makkah
EPI_ISL_437460Makkah
EPI_ISL_437461Makkah
EPI_ISL_437462Makkah
EPI_ISL_437463Makkah
EPI_ISL_437464Makkah
EPI_ISL_437465Makkah
EPI_ISL_437466Makkah
EPI_ISL_437467Makkah
EPI_ISL_437468Makkah
EPI_ISL_437476Makkah
EPI_ISL_437477Makkah
EPI_ISL_437478Makkah
EPI_ISL_437479Makkah
EPI_ISL_437481Makkah
EPI_ISL_437691Makkah
EPI_ISL_437692Makkah
EPI_ISL_437693Makkah
EPI_ISL_437694Makkah
EPI_ISL_437695Makkah
EPI_ISL_437696Makkah
EPI_ISL_437697Makkah
EPI_ISL_437698Makkah
EPI_ISL_437699Makkah
EPI_ISL_437700Makkah
EPI_ISL_437701Makkah
EPI_ISL_437702Makkah
EPI_ISL_437703Makkah
EPI_ISL_437704Makkah
EPI_ISL_437705Makkah
EPI_ISL_437706Makkah
EPI_ISL_437707Makkah
EPI_ISL_437708Makkah
EPI_ISL_437709Makkah
EPI_ISL_437710Makkah
EPI_ISL_437711Makkah
EPI_ISL_437712Makkah
EPI_ISL_437713Makkah
EPI_ISL_437714Makkah
EPI_ISL_437718Makkah
EPI_ISL_437719Makkah
EPI_ISL_437720Makkah
EPI_ISL_437721Makkah
EPI_ISL_437722Makkah
EPI_ISL_437723Makkah
EPI_ISL_437724Makkah
EPI_ISL_437725Makkah
EPI_ISL_437726Makkah
EPI_ISL_437727Makkah
EPI_ISL_437728Makkah
EPI_ISL_437729Makkah
EPI_ISL_437730Makkah
EPI_ISL_437731Makkah
EPI_ISL_437732Makkah
EPI_ISL_437761Makkah
EPI_ISL_437762Makkah
EPI_ISL_513214Makkah
EPI_ISL_513215Makkah
EPI_ISL_513216Makkah
EPI_ISL_513217Makkah
EPI_ISL_513218Makkah
EPI_ISL_513219Makkah
EPI_ISL_513220Makkah
EPI_ISL_513221Makkah
EPI_ISL_513222Makkah
EPI_ISL_513223Makkah
EPI_ISL_513224Makkah
EPI_ISL_513225Makkah
EPI_ISL_513226Makkah
EPI_ISL_513227Makkah
EPI_ISL_513228Makkah
EPI_ISL_513229Makkah
EPI_ISL_513230Makkah
EPI_ISL_513231Makkah
EPI_ISL_513232Makkah
EPI_ISL_513233Makkah
EPI_ISL_513234Makkah
EPI_ISL_513235Makkah
EPI_ISL_513236Makkah
EPI_ISL_513237Makkah
EPI_ISL_513238Makkah
EPI_ISL_513239Makkah
EPI_ISL_513240Makkah
EPI_ISL_513241Makkah
EPI_ISL_513242Makkah
EPI_ISL_513243Makkah
EPI_ISL_513244Makkah
EPI_ISL_513245Makkah
EPI_ISL_513246Makkah
EPI_ISL_513247Makkah
EPI_ISL_513248Makkah
EPI_ISL_513249Makkah
EPI_ISL_513250Makkah
EPI_ISL_513251Makkah
EPI_ISL_513252Makkah
EPI_ISL_513253Makkah
EPI_ISL_513254Makkah
EPI_ISL_513255Makkah
EPI_ISL_513256Makkah
EPI_ISL_513257Makkah
EPI_ISL_513258Makkah
EPI_ISL_513259Makkah
EPI_ISL_513260Makkah
EPI_ISL_513261Makkah
EPI_ISL_513262Makkah
EPI_ISL_513263Makkah
EPI_ISL_513264Makkah
SaudiArabia/KAIMRC-Alghoribi/2020 EPI_ISL_416432Riyadh2020-03-07

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