University of Turin logo DBIOS logo


Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Jan 31 07:00:30 2021 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

Go to home

Romania

Number of isolates sequences available: 191

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
EPI_ISL_639739
EPI_ISL_738317
EPI_ISL_738318
EPI_ISL_738319
EPI_ISL_738320
EPI_ISL_738321
EPI_ISL_738322
EPI_ISL_738323
EPI_ISL_738324
EPI_ISL_738325
EPI_ISL_738326
EPI_ISL_738327
EPI_ISL_738328
EPI_ISL_738329
EPI_ISL_738330
EPI_ISL_738331
EPI_ISL_738332
EPI_ISL_738333
EPI_ISL_738334
EPI_ISL_738335
EPI_ISL_738336
EPI_ISL_738337
EPI_ISL_738338
EPI_ISL_738339
EPI_ISL_738340
EPI_ISL_738341
EPI_ISL_738342
EPI_ISL_738343
EPI_ISL_738344
EPI_ISL_738345
EPI_ISL_738346
EPI_ISL_738347
EPI_ISL_738348
EPI_ISL_738349
EPI_ISL_754238
EPI_ISL_455473Arges
EPI_ISL_455474Arges
EPI_ISL_455475Arges
EPI_ISL_445220Bucharest
EPI_ISL_862832Bucharest
EPI_ISL_885152Bucharest
EPI_ISL_885153Bucharest
EPI_ISL_885154Bucharest
EPI_ISL_455468Bucuresti
EPI_ISL_455469Bucuresti
EPI_ISL_455470Bucuresti
EPI_ISL_455471Bucuresti
EPI_ISL_455476Bucuresti
EPI_ISL_455477Bucuresti
EPI_ISL_455479Bucuresti
EPI_ISL_467778Bucuresti
EPI_ISL_467779Bucuresti
EPI_ISL_468134Bucuresti
EPI_ISL_468135Bucuresti
EPI_ISL_468136Bucuresti
EPI_ISL_468145Bucuresti
EPI_ISL_468147Bucuresti
EPI_ISL_468148Bucuresti
EPI_ISL_468149Bucuresti
EPI_ISL_468150Bucuresti
EPI_ISL_468151Bucuresti
EPI_ISL_468152Bucuresti
EPI_ISL_468153Bucuresti
EPI_ISL_468154Bucuresti
EPI_ISL_468155Bucuresti
EPI_ISL_471420Bucuresti
EPI_ISL_471422Bucuresti
EPI_ISL_888677Bucuresti
EPI_ISL_888678Bucuresti
EPI_ISL_455472Buzau
EPI_ISL_471416Buzau
EPI_ISL_471417Buzau
EPI_ISL_471419Buzau
EPI_ISL_471423Buzau
EPI_ISL_861712Cluj
EPI_ISL_861713Cluj Napoca
EPI_ISL_445243Constanta
EPI_ISL_447054Constanta
EPI_ISL_467781Constanta
EPI_ISL_875346Constanta
EPI_ISL_794744Giurgiu
EPI_ISL_807154Hunedoara
EPI_ISL_807155Hunedoara
EPI_ISL_807156Hunedoara
EPI_ISL_862831Ilfov
EPI_ISL_862833Ilfov
EPI_ISL_862834Ilfov
EPI_ISL_862835Ilfov
EPI_ISL_468156Mioveni
EPI_ISL_815390Ploiesti
EPI_ISL_862836Prahova
EPI_ISL_815391Sanmihaiu Roman
EPI_ISL_468137Suceava
EPI_ISL_468138Suceava
EPI_ISL_468139Suceava
EPI_ISL_468140Suceava
EPI_ISL_468141Suceava
EPI_ISL_468142Suceava
EPI_ISL_468143Suceava
EPI_ISL_468144Suceava
EPI_ISL_468146Suceava
EPI_ISL_468157Suceava
EPI_ISL_468158Suceava
EPI_ISL_471421Suceava
EPI_ISL_486834Suceava
EPI_ISL_486854Suceava
EPI_ISL_486855Suceava
EPI_ISL_486856Suceava
EPI_ISL_491036Suceava
EPI_ISL_491037Suceava
EPI_ISL_491038Suceava
EPI_ISL_491039Suceava
EPI_ISL_491040Suceava
EPI_ISL_491041Suceava
EPI_ISL_491042Suceava
EPI_ISL_491043Suceava
EPI_ISL_491044Suceava
EPI_ISL_491045Suceava
EPI_ISL_491046Suceava
EPI_ISL_491047Suceava
EPI_ISL_491048Suceava
EPI_ISL_491049Suceava
EPI_ISL_491050Suceava
EPI_ISL_491051Suceava
EPI_ISL_491052Suceava
EPI_ISL_491053Suceava
EPI_ISL_491054Suceava
EPI_ISL_491055Suceava
EPI_ISL_491056Suceava
EPI_ISL_491057Suceava
EPI_ISL_491058Suceava
EPI_ISL_491059Suceava
EPI_ISL_491060Suceava
EPI_ISL_491061Suceava
EPI_ISL_491062Suceava
EPI_ISL_491063Suceava
EPI_ISL_491064Suceava
EPI_ISL_491065Suceava
EPI_ISL_491066Suceava
EPI_ISL_491067Suceava
EPI_ISL_491068Suceava
EPI_ISL_491069Suceava
EPI_ISL_491070Suceava
EPI_ISL_491071Suceava
EPI_ISL_491072Suceava
EPI_ISL_491073Suceava
EPI_ISL_491074Suceava
EPI_ISL_491075Suceava
EPI_ISL_491076Suceava
EPI_ISL_491077Suceava
EPI_ISL_491078Suceava
EPI_ISL_491079Suceava
EPI_ISL_491080Suceava
EPI_ISL_491081Suceava
EPI_ISL_491082Suceava
EPI_ISL_491083Suceava
EPI_ISL_491084Suceava
EPI_ISL_491085Suceava
EPI_ISL_491086Suceava
EPI_ISL_491087Suceava
EPI_ISL_491088Suceava
EPI_ISL_491089Suceava
EPI_ISL_491090Suceava
EPI_ISL_491091Suceava
EPI_ISL_678397Suceava
EPI_ISL_678398Suceava
EPI_ISL_861710Suceava
EPI_ISL_869241Suceava
EPI_ISL_891221Suceava
EPI_ISL_891222Suceava
EPI_ISL_891223Suceava
EPI_ISL_891224Suceava
EPI_ISL_891225Suceava
EPI_ISL_891226Suceava
EPI_ISL_891227Suceava
EPI_ISL_891228Suceava
EPI_ISL_891229Suceava
EPI_ISL_891230Suceava
EPI_ISL_896373Suceava
EPI_ISL_896374Suceava
EPI_ISL_896375Suceava
EPI_ISL_896376Suceava
EPI_ISL_896377Suceava
EPI_ISL_896378Suceava
EPI_ISL_896379Suceava
EPI_ISL_896380Suceava
EPI_ISL_896381Suceava
EPI_ISL_467780Teleorman
EPI_ISL_861711Tulcea
EPI_ISL_471424Valcea
EPI_ISL_471418Vrancea

Download all results


GISAID data provided on this website is subject to GISAID’s Terms and Conditions | Privacy policy of University of Turin.