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Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Oct 25 07:18:47 2020 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Panama

Number of isolates sequences available: 314

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
EPI_ISL_496761Bocas del Toro
EPI_ISL_496912Bocas del ToroThe sequence is not availableThe sequence is not available
EPI_ISL_496687Chiriqui
EPI_ISL_496688Chiriqui
EPI_ISL_496715Chiriqui
EPI_ISL_496746Chiriqui
EPI_ISL_496759ChiriquiThe sequence is not availableThe sequence is not available
EPI_ISL_496823ChiriquiThe sequence is not available
EPI_ISL_496860Chiriqui
EPI_ISL_496862ChiriquiThe sequence is not available
EPI_ISL_496901Chiriqui
EPI_ISL_496666CocleThe sequence is not available
EPI_ISL_496705Cocle
EPI_ISL_496720CocleThe sequence is not available
EPI_ISL_496739Cocle
EPI_ISL_496747CocleThe sequence is not availableThe sequence is not available
EPI_ISL_496748Cocle
EPI_ISL_496783CocleThe sequence is not available
EPI_ISL_496789CocleThe sequence is not available
EPI_ISL_496790CocleThe sequence is not available
EPI_ISL_496794CocleThe sequence is not available
EPI_ISL_496801Cocle
EPI_ISL_496816Cocle
EPI_ISL_496825CocleThe sequence is not available
EPI_ISL_496875Cocle
EPI_ISL_496876CocleThe sequence is not available
EPI_ISL_496879Cocle
EPI_ISL_496883Cocle
EPI_ISL_496891Cocle
EPI_ISL_496897Cocle
EPI_ISL_496630Colon
EPI_ISL_496669ColonThe sequence is not available
EPI_ISL_496672ColonThe sequence is not availableThe sequence is not available
EPI_ISL_496734ColonThe sequence is not available
EPI_ISL_496753Colon
EPI_ISL_496754Colon
EPI_ISL_496756Colon
EPI_ISL_496757ColonThe sequence is not availableThe sequence is not available
EPI_ISL_496767Colon
EPI_ISL_496780Colon
EPI_ISL_496784ColonThe sequence is not available
EPI_ISL_496812ColonThe sequence is not availableThe sequence is not available
EPI_ISL_496835ColonThe sequence is not available
EPI_ISL_496836ColonThe sequence is not available
EPI_ISL_496857Colon
EPI_ISL_496877Colon
EPI_ISL_496878Colon
EPI_ISL_496880Colon
EPI_ISL_496881Colon
EPI_ISL_496884Colon
EPI_ISL_496892Colon
EPI_ISL_496893Colon
EPI_ISL_496895Colon
EPI_ISL_496896Colon
EPI_ISL_496898Colon
EPI_ISL_496899ColonThe sequence is not available
EPI_ISL_496900Colon
EPI_ISL_496908Colon
EPI_ISL_496909Colon
EPI_ISL_496910Colon
EPI_ISL_496911Colon
EPI_ISL_496915Colon
EPI_ISL_496706Guna YalaThe sequence is not available
EPI_ISL_496738Guna YalaThe sequence is not availableThe sequence is not available
EPI_ISL_496749Guna YalaThe sequence is not available
EPI_ISL_496764Guna Yala
EPI_ISL_496770Guna Yala
EPI_ISL_496828Guna YalaThe sequence is not available
EPI_ISL_496855Guna YalaThe sequence is not available
EPI_ISL_496856Guna Yala
EPI_ISL_496870Guna YalaThe sequence is not available
EPI_ISL_496871Guna Yala
EPI_ISL_496872Guna YalaThe sequence is not availableThe sequence is not available
EPI_ISL_496873Guna YalaThe sequence is not available
EPI_ISL_496874Guna Yala
EPI_ISL_496903Guna Yala
EPI_ISL_496904Guna Yala
EPI_ISL_496905Guna Yala
EPI_ISL_496914Guna Yala
EPI_ISL_496772Herrera
EPI_ISL_496824HerreraThe sequence is not available
EPI_ISL_496858Los Santos
EPI_ISL_496603Panama CenterThe sequence is not available
EPI_ISL_496604Panama Center
EPI_ISL_496605Panama CenterThe sequence is not available
EPI_ISL_496606Panama CenterThe sequence is not available
EPI_ISL_496607Panama Center
EPI_ISL_496608Panama Center
EPI_ISL_496609Panama Center
EPI_ISL_496610Panama Center
EPI_ISL_496611Panama Center
EPI_ISL_496612Panama Center
EPI_ISL_496613Panama Center
EPI_ISL_496614Panama Center
EPI_ISL_496615Panama Center
EPI_ISL_496616Panama Center
EPI_ISL_496617Panama Center
EPI_ISL_496618Panama Center
EPI_ISL_496619Panama Center
EPI_ISL_496620Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496621Panama Center
EPI_ISL_496622Panama Center
EPI_ISL_496623Panama Center
EPI_ISL_496624Panama Center
EPI_ISL_496626Panama Center
EPI_ISL_496627Panama Center
EPI_ISL_496629Panama Center
EPI_ISL_496634Panama Center
EPI_ISL_496635Panama CenterThe sequence is not availableThe sequence is not availableThe sequence is not available
EPI_ISL_496639Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496640Panama Center
EPI_ISL_496641Panama Center
EPI_ISL_496644Panama Center
EPI_ISL_496646Panama Center
EPI_ISL_496647Panama Center
EPI_ISL_496648Panama CenterThe sequence is not available
EPI_ISL_496649Panama CenterThe sequence is not available
EPI_ISL_496650Panama CenterThe sequence is not available
EPI_ISL_496651Panama CenterThe sequence is not available
EPI_ISL_496652Panama CenterThe sequence is not available
EPI_ISL_496655Panama Center
EPI_ISL_496656Panama Center
EPI_ISL_496658Panama CenterThe sequence is not available
EPI_ISL_496659Panama CenterThe sequence is not available
EPI_ISL_496661Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496662Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496665Panama CenterThe sequence is not available
EPI_ISL_496668Panama CenterThe sequence is not available
EPI_ISL_496670Panama Center
EPI_ISL_496673Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496674Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496676Panama Center
EPI_ISL_496677Panama CenterThe sequence is not available
EPI_ISL_496678Panama Center
EPI_ISL_496679Panama CenterThe sequence is not available
EPI_ISL_496682Panama CenterThe sequence is not available
EPI_ISL_496683Panama CenterThe sequence is not available
EPI_ISL_496684Panama CenterThe sequence is not available
EPI_ISL_496685Panama CenterThe sequence is not available
EPI_ISL_496686Panama Center
EPI_ISL_496689Panama Center
EPI_ISL_496690Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496691Panama CenterThe sequence is not available
EPI_ISL_496692Panama Center
EPI_ISL_496693Panama Center
EPI_ISL_496694Panama Center
EPI_ISL_496696Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496697Panama Center
EPI_ISL_496699Panama Center
EPI_ISL_496700Panama Center
EPI_ISL_496701Panama Center
EPI_ISL_496702Panama CenterThe sequence is not available
EPI_ISL_496703Panama Center
EPI_ISL_496704Panama Center
EPI_ISL_496707Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496708Panama Center
EPI_ISL_496710Panama Center
EPI_ISL_496711Panama CenterThe sequence is not available
EPI_ISL_496712Panama Center
EPI_ISL_496714Panama CenterThe sequence is not available
EPI_ISL_496716Panama Center
EPI_ISL_496717Panama CenterThe sequence is not availableThe sequence is not availableThe sequence is not available
EPI_ISL_496718Panama CenterThe sequence is not available
EPI_ISL_496721Panama Center
EPI_ISL_496722Panama CenterThe sequence is not available
EPI_ISL_496723Panama Center
EPI_ISL_496724Panama Center
EPI_ISL_496725Panama Center
EPI_ISL_496726Panama CenterThe sequence is not available
EPI_ISL_496727Panama CenterThe sequence is not available
EPI_ISL_496728Panama Center
EPI_ISL_496729Panama Center
EPI_ISL_496730Panama Center
EPI_ISL_496731Panama Center
EPI_ISL_496732Panama Center
EPI_ISL_496733Panama Center
EPI_ISL_496735Panama Center
EPI_ISL_496736Panama CenterThe sequence is not available
EPI_ISL_496737Panama Center
EPI_ISL_496740Panama Center
EPI_ISL_496743Panama Center
EPI_ISL_496744Panama Center
EPI_ISL_496745Panama Center
EPI_ISL_496750Panama Center
EPI_ISL_496751Panama CenterThe sequence is not available
EPI_ISL_496752Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496755Panama Center
EPI_ISL_496758Panama CenterThe sequence is not available
EPI_ISL_496763Panama CenterThe sequence is not available
EPI_ISL_496768Panama CenterThe sequence is not available
EPI_ISL_496769Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496773Panama CenterThe sequence is not available
EPI_ISL_496775Panama CenterThe sequence is not available
EPI_ISL_496776Panama CenterThe sequence is not available
EPI_ISL_496777Panama CenterThe sequence is not available
EPI_ISL_496781Panama CenterThe sequence is not available
EPI_ISL_496782Panama CenterThe sequence is not available
EPI_ISL_496785Panama Center
EPI_ISL_496786Panama Center
EPI_ISL_496787Panama CenterThe sequence is not available
EPI_ISL_496788Panama CenterThe sequence is not available
EPI_ISL_496792Panama CenterThe sequence is not available
EPI_ISL_496793Panama CenterThe sequence is not available
EPI_ISL_496796Panama CenterThe sequence is not available
EPI_ISL_496797Panama CenterThe sequence is not available
EPI_ISL_496798Panama CenterThe sequence is not available
EPI_ISL_496799Panama CenterThe sequence is not available
EPI_ISL_496802Panama CenterThe sequence is not available
EPI_ISL_496803Panama CenterThe sequence is not available
EPI_ISL_496804Panama CenterThe sequence is not available
EPI_ISL_496805Panama CenterThe sequence is not available
EPI_ISL_496807Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496808Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496809Panama Center
EPI_ISL_496813Panama CenterThe sequence is not available
EPI_ISL_496814Panama CenterThe sequence is not available
EPI_ISL_496818Panama CenterThe sequence is not available
EPI_ISL_496819Panama CenterThe sequence is not available
EPI_ISL_496820Panama Center
EPI_ISL_496826Panama Center
EPI_ISL_496827Panama CenterThe sequence is not available
EPI_ISL_496830Panama CenterThe sequence is not available
EPI_ISL_496831Panama CenterThe sequence is not available
EPI_ISL_496832Panama CenterThe sequence is not available
EPI_ISL_496834Panama CenterThe sequence is not available
EPI_ISL_496837Panama Center
EPI_ISL_496838Panama Center
EPI_ISL_496839Panama Center
EPI_ISL_496840Panama Center
EPI_ISL_496841Panama Center
EPI_ISL_496842Panama Center
EPI_ISL_496843Panama CenterThe sequence is not available
EPI_ISL_496845Panama CenterThe sequence is not available
EPI_ISL_496846Panama CenterThe sequence is not available
EPI_ISL_496847Panama Center
EPI_ISL_496848Panama Center
EPI_ISL_496849Panama CenterThe sequence is not availableThe sequence is not available
EPI_ISL_496850Panama Center
EPI_ISL_496851Panama Center
EPI_ISL_496852Panama Center
EPI_ISL_496854Panama Center
EPI_ISL_496859Panama CenterThe sequence is not available
EPI_ISL_496866Panama Center
EPI_ISL_496867Panama Center
EPI_ISL_496868Panama Center
EPI_ISL_496885Panama CenterThe sequence is not available
EPI_ISL_496886Panama CenterThe sequence is not available
EPI_ISL_496887Panama CenterThe sequence is not available
EPI_ISL_496888Panama CenterThe sequence is not available
EPI_ISL_496889Panama Center
EPI_ISL_496890Panama CenterThe sequence is not available
EPI_ISL_496913Panama CenterThe sequence is not availableThe sequence is not available
Panama/328677/2020 EPI_ISL_415152Panama City2020-03-06
EPI_ISL_496625Panama West
EPI_ISL_496628Panama West
EPI_ISL_496631Panama West
EPI_ISL_496632Panama West
EPI_ISL_496636Panama West
EPI_ISL_496637Panama WestThe sequence is not available
EPI_ISL_496638Panama West
EPI_ISL_496643Panama WestThe sequence is not available
EPI_ISL_496645Panama West
EPI_ISL_496657Panama WestThe sequence is not available
EPI_ISL_496660Panama WestThe sequence is not available
EPI_ISL_496663Panama WestThe sequence is not available
EPI_ISL_496664Panama WestThe sequence is not available
EPI_ISL_496667Panama WestThe sequence is not availableThe sequence is not available
EPI_ISL_496671Panama WestThe sequence is not available
EPI_ISL_496675Panama WestThe sequence is not available
EPI_ISL_496680Panama WestThe sequence is not available
EPI_ISL_496681Panama West
EPI_ISL_496695Panama West
EPI_ISL_496698Panama WestThe sequence is not available
EPI_ISL_496709Panama West
EPI_ISL_496713Panama West
EPI_ISL_496741Panama West
EPI_ISL_496742Panama West
EPI_ISL_496760Panama WestThe sequence is not available
EPI_ISL_496762Panama WestThe sequence is not available
EPI_ISL_496765Panama WestThe sequence is not availableThe sequence is not available
EPI_ISL_496766Panama West
EPI_ISL_496771Panama WestThe sequence is not available
EPI_ISL_496774Panama WestThe sequence is not available
EPI_ISL_496778Panama WestThe sequence is not available
EPI_ISL_496779Panama West
EPI_ISL_496791Panama WestThe sequence is not available
EPI_ISL_496795Panama West
EPI_ISL_496800Panama WestThe sequence is not available
EPI_ISL_496806Panama WestThe sequence is not available
EPI_ISL_496811Panama WestThe sequence is not available
EPI_ISL_496815Panama WestThe sequence is not available
EPI_ISL_496817Panama WestThe sequence is not available
EPI_ISL_496821Panama WestThe sequence is not available
EPI_ISL_496822Panama WestThe sequence is not available
EPI_ISL_496829Panama WestThe sequence is not available
EPI_ISL_496833Panama WestThe sequence is not available
EPI_ISL_496844Panama West
EPI_ISL_496853Panama West
EPI_ISL_496861Panama WestThe sequence is not available
EPI_ISL_496863Panama WestThe sequence is not available
EPI_ISL_496864Panama WestThe sequence is not availableThe sequence is not available
EPI_ISL_496865Panama WestThe sequence is not available
EPI_ISL_496869Panama WestThe sequence is not availableThe sequence is not available
EPI_ISL_496882Panama WestThe sequence is not availableThe sequence is not available
EPI_ISL_496894Panama West
EPI_ISL_496902Panama WestThe sequence is not available
EPI_ISL_496906Panama West
EPI_ISL_496907Panama West
EPI_ISL_496633Santiago
EPI_ISL_496642Santiago
EPI_ISL_496653SantiagoThe sequence is not available
EPI_ISL_496654Santiago
EPI_ISL_496719SantiagoThe sequence is not available
EPI_ISL_496810SantiagoThe sequence is not available

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