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Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Oct 25 07:18:47 2020 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Norway

Number of isolates sequences available: 437

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
Norway/1495/2020 EPI_ISL_4201342020-02-28
Norway/1455/2020 EPI_ISL_4201352020-02-28
Norway/1694/2020 EPI_ISL_4201362020-03-04
Norway/1772/2020 EPI_ISL_4201372020-03-08
Norway/1781/2020 EPI_ISL_4201382020-03-05
Norway/1811/2020 EPI_ISL_4201392020-03-05
Norway/1867/2020 EPI_ISL_4201412020-03-10
Norway/1917/2020 EPI_ISL_4201432020-03-10
Norway/1951/2020 EPI_ISL_4201452020-03-09
Norway/1955/2020 EPI_ISL_4201462020-03-11
Norway/1989/2020 EPI_ISL_4201472020-03-10
Norway/2052/2020 EPI_ISL_4201482020-03-14
Norway/2065/2020 EPI_ISL_4201492020-03-09
Norway/2084/2020 EPI_ISL_4201502020-03-09
Norway/2087/2020 EPI_ISL_4201512020-03-17
Norway/2088/2020 EPI_ISL_4201522020-03-17
Norway/2090/2020 EPI_ISL_4201532020-03-16
Norway/2093/2020 EPI_ISL_4203102020-03-16
Norway/2113/2020 EPI_ISL_4203112020-03-18
Norway/2114/2020 EPI_ISL_4203122020-03-18
Norway/1953/2020 EPI_ISL_4203132020-03-10
EPI_ISL_447837
EPI_ISL_447838
EPI_ISL_447839
EPI_ISL_449786
EPI_ISL_449787
EPI_ISL_449788
EPI_ISL_449789
EPI_ISL_449790
EPI_ISL_449791
EPI_ISL_449792
EPI_ISL_449793
EPI_ISL_449794
EPI_ISL_470882
EPI_ISL_471172
EPI_ISL_471173
EPI_ISL_471174
EPI_ISL_471175
EPI_ISL_471176
EPI_ISL_471177
EPI_ISL_481206
EPI_ISL_481207
EPI_ISL_481208
EPI_ISL_481209
EPI_ISL_481210
EPI_ISL_481211
EPI_ISL_481212
EPI_ISL_481213
EPI_ISL_481214
EPI_ISL_481215
EPI_ISL_481216
EPI_ISL_481217
EPI_ISL_481218
EPI_ISL_481219The sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not available
EPI_ISL_493350
EPI_ISL_493351
EPI_ISL_493352
EPI_ISL_493353
EPI_ISL_493354
EPI_ISL_493355
EPI_ISL_493356
EPI_ISL_493357
EPI_ISL_493358
EPI_ISL_493359
EPI_ISL_493360
EPI_ISL_493361
EPI_ISL_493362
EPI_ISL_493363
EPI_ISL_493364
EPI_ISL_493365
EPI_ISL_493366
EPI_ISL_493367
EPI_ISL_493368
EPI_ISL_493369
EPI_ISL_493370
EPI_ISL_493371
EPI_ISL_493372
EPI_ISL_493373
EPI_ISL_493374
EPI_ISL_493375
EPI_ISL_493376
EPI_ISL_493377
EPI_ISL_493378
EPI_ISL_493379
EPI_ISL_493380
EPI_ISL_493381
EPI_ISL_493382
EPI_ISL_493383
EPI_ISL_493384
EPI_ISL_493385
EPI_ISL_493386
EPI_ISL_493387
EPI_ISL_493388
EPI_ISL_493389
EPI_ISL_500768
EPI_ISL_500769
EPI_ISL_500770
EPI_ISL_500771
EPI_ISL_500772
EPI_ISL_500773
EPI_ISL_500774
EPI_ISL_500775
EPI_ISL_500776
EPI_ISL_500777
EPI_ISL_500778
EPI_ISL_500779
EPI_ISL_500780
EPI_ISL_500781
EPI_ISL_500782
EPI_ISL_500783
EPI_ISL_500784
EPI_ISL_500785
EPI_ISL_500786
EPI_ISL_500787
EPI_ISL_500788
EPI_ISL_500789
EPI_ISL_500790
EPI_ISL_500791
EPI_ISL_500792
EPI_ISL_500793
EPI_ISL_500794
EPI_ISL_500795
EPI_ISL_500796
EPI_ISL_500797
EPI_ISL_500798
EPI_ISL_500799
EPI_ISL_500800
EPI_ISL_590924
EPI_ISL_590925
EPI_ISL_590926
EPI_ISL_590938
EPI_ISL_590939
EPI_ISL_590940
EPI_ISL_590941
EPI_ISL_590942
EPI_ISL_590943
EPI_ISL_590944
EPI_ISL_590946
EPI_ISL_590947
EPI_ISL_590949
EPI_ISL_590950
EPI_ISL_591007
EPI_ISL_549048Agder
EPI_ISL_549103Agder
EPI_ISL_549104Agder
EPI_ISL_549110Agder
EPI_ISL_549111Agder
EPI_ISL_590904Agder
EPI_ISL_590905Agder
EPI_ISL_590906Agder
EPI_ISL_590907Agder
EPI_ISL_590915Agder
EPI_ISL_590936Agder
EPI_ISL_590937Agder
EPI_ISL_590984Agder
EPI_ISL_541970Bergen
EPI_ISL_549122Innlandet
EPI_ISL_590951Innlandet
EPI_ISL_590952Innlandet
EPI_ISL_590883More og Romsdal
EPI_ISL_591012More og Romsdal
EPI_ISL_591018More og Romsdal
EPI_ISL_591019More og Romsdal
EPI_ISL_549097MoreogRomsdal
EPI_ISL_549114MoreogRomsdal
Norway/1379/2020 EPI_ISL_417483Oslo2020-02-27
Norway/1380/2020 EPI_ISL_417484Oslo2020-02-26
Norway/1526/2020 EPI_ISL_417485Oslo2020-03-02
Norway/1538/2020 EPI_ISL_417486Oslo2020-03-01
Norway/1539/2020 EPI_ISL_417487Oslo2020-03-01
Norway/1493/2020 EPI_ISL_417488Oslo2020-02-29
Norway/1494/2020 EPI_ISL_417489Oslo2020-02-29
Norway/1443/2020 EPI_ISL_417490Oslo2020-02-27
EPI_ISL_549027Oslo
EPI_ISL_549047Oslo
EPI_ISL_549049Oslo
EPI_ISL_549050Oslo
EPI_ISL_549051Oslo
EPI_ISL_549052Oslo
EPI_ISL_549053Oslo
EPI_ISL_549054Oslo
EPI_ISL_549055Oslo
EPI_ISL_549056Oslo
EPI_ISL_549057Oslo
EPI_ISL_549058Oslo
EPI_ISL_549060Oslo
EPI_ISL_549061Oslo
EPI_ISL_549065Oslo
EPI_ISL_549066Oslo
EPI_ISL_549068Oslo
EPI_ISL_549069Oslo
EPI_ISL_549075Oslo
EPI_ISL_549076Oslo
EPI_ISL_549077Oslo
EPI_ISL_549079Oslo
EPI_ISL_549080Oslo
EPI_ISL_549082Oslo
EPI_ISL_549084Oslo
EPI_ISL_549085Oslo
EPI_ISL_549093Oslo
EPI_ISL_549096Oslo
EPI_ISL_549100Oslo
EPI_ISL_549108Oslo
EPI_ISL_549109Oslo
EPI_ISL_549115Oslo
EPI_ISL_549116Oslo
EPI_ISL_549117Oslo
EPI_ISL_549118Oslo
EPI_ISL_549119Oslo
EPI_ISL_549120Oslo
EPI_ISL_549125Oslo
EPI_ISL_549132Oslo
EPI_ISL_549138Oslo
EPI_ISL_549139Oslo
EPI_ISL_549140Oslo
EPI_ISL_549142Oslo
EPI_ISL_549144Oslo
EPI_ISL_549155Oslo
EPI_ISL_549156Oslo
EPI_ISL_590878Oslo
EPI_ISL_590881Oslo
EPI_ISL_590900Oslo
EPI_ISL_590901Oslo
EPI_ISL_590902Oslo
EPI_ISL_590903Oslo
EPI_ISL_590908Oslo
EPI_ISL_590909Oslo
EPI_ISL_590910Oslo
EPI_ISL_590912Oslo
EPI_ISL_590913Oslo
EPI_ISL_590914Oslo
EPI_ISL_590916Oslo
EPI_ISL_590918Oslo
EPI_ISL_590923Oslo
EPI_ISL_590927Oslo
EPI_ISL_590928Oslo
EPI_ISL_590930Oslo
EPI_ISL_590934Oslo
EPI_ISL_590935Oslo
EPI_ISL_590978Oslo
EPI_ISL_590979Oslo
EPI_ISL_590980Oslo
EPI_ISL_591011Oslo
EPI_ISL_591020Oslo
EPI_ISL_549149Rogaland
EPI_ISL_549150Rogaland
EPI_ISL_549151Rogaland
EPI_ISL_549152Rogaland
EPI_ISL_590877Rogaland
EPI_ISL_590953Rogaland
EPI_ISL_590954Rogaland
EPI_ISL_590955Rogaland
EPI_ISL_590956Rogaland
EPI_ISL_590957Rogaland
EPI_ISL_590958Rogaland
EPI_ISL_590959Rogaland
EPI_ISL_590960Rogaland
EPI_ISL_590961Rogaland
EPI_ISL_590962Rogaland
EPI_ISL_590963Rogaland
EPI_ISL_590964Rogaland
EPI_ISL_590965Rogaland
EPI_ISL_590966Rogaland
EPI_ISL_590967Rogaland
EPI_ISL_590968Rogaland
EPI_ISL_590969Rogaland
EPI_ISL_590970Rogaland
EPI_ISL_590971Rogaland
EPI_ISL_590972Rogaland
EPI_ISL_590973Rogaland
EPI_ISL_590974Rogaland
EPI_ISL_590975Rogaland
EPI_ISL_590976Rogaland
EPI_ISL_590977Rogaland
EPI_ISL_591021Rogaland
EPI_ISL_549107TromsogFinnmark
EPI_ISL_590893Trondelag
EPI_ISL_591014Trondelag
EPI_ISL_450346Trondheim
EPI_ISL_450347Trondheim
EPI_ISL_450348Trondheim
EPI_ISL_450349Trondheim
EPI_ISL_450350Trondheim
EPI_ISL_450351Trondheim
EPI_ISL_450352Trondheim
EPI_ISL_590885Vestfold og Telemark
EPI_ISL_590886Vestfold og Telemark
EPI_ISL_590887Vestfold og Telemark
EPI_ISL_590888Vestfold og Telemark
EPI_ISL_590917Vestfold og Telemark
EPI_ISL_590919Vestfold og Telemark
EPI_ISL_590920Vestfold og Telemark
EPI_ISL_590983Vestfold og Telemark
EPI_ISL_591010Vestfold og Telemark
EPI_ISL_591013Vestfold og Telemark
EPI_ISL_590884Vestland
EPI_ISL_590899Vestland
EPI_ISL_590911Vestland
EPI_ISL_590981Vestland
EPI_ISL_590985Vestland
EPI_ISL_591008Vestland
EPI_ISL_549059Vestlandet
EPI_ISL_549070Vestlandet
EPI_ISL_549081Vestlandet
EPI_ISL_549124Vestlandet
EPI_ISL_549028Viken
EPI_ISL_549029Viken
EPI_ISL_549030Viken
EPI_ISL_549031Viken
EPI_ISL_549032Viken
EPI_ISL_549033Viken
EPI_ISL_549034Viken
EPI_ISL_549035Viken
EPI_ISL_549036Viken
EPI_ISL_549037Viken
EPI_ISL_549038Viken
EPI_ISL_549039Viken
EPI_ISL_549040Viken
EPI_ISL_549041Viken
EPI_ISL_549042Viken
EPI_ISL_549043Viken
EPI_ISL_549044Viken
EPI_ISL_549045Viken
EPI_ISL_549046Viken
EPI_ISL_549062Viken
EPI_ISL_549063Viken
EPI_ISL_549064Viken
EPI_ISL_549067Viken
EPI_ISL_549071Viken
EPI_ISL_549072Viken
EPI_ISL_549073Viken
EPI_ISL_549074Viken
EPI_ISL_549078Viken
EPI_ISL_549083Viken
EPI_ISL_549086Viken
EPI_ISL_549087Viken
EPI_ISL_549088Viken
EPI_ISL_549089Viken
EPI_ISL_549090Viken
EPI_ISL_549091Viken
EPI_ISL_549092Viken
EPI_ISL_549094Viken
EPI_ISL_549095Viken
EPI_ISL_549098Viken
EPI_ISL_549099Viken
EPI_ISL_549101Viken
EPI_ISL_549102Viken
EPI_ISL_549105Viken
EPI_ISL_549106Viken
EPI_ISL_549112Viken
EPI_ISL_549113Viken
EPI_ISL_549121Viken
EPI_ISL_549123Viken
EPI_ISL_549126Viken
EPI_ISL_549127Viken
EPI_ISL_549128Viken
EPI_ISL_549129Viken
EPI_ISL_549130Viken
EPI_ISL_549131Viken
EPI_ISL_549133Viken
EPI_ISL_549134Viken
EPI_ISL_549135Viken
EPI_ISL_549136Viken
EPI_ISL_549137Viken
EPI_ISL_549141Viken
EPI_ISL_549143Viken
EPI_ISL_549145Viken
EPI_ISL_549146Viken
EPI_ISL_549147Viken
EPI_ISL_549148Viken
EPI_ISL_549153Viken
EPI_ISL_549154Viken
EPI_ISL_549157Viken
EPI_ISL_549158Viken
EPI_ISL_549159Viken
EPI_ISL_549160Viken
EPI_ISL_549161Viken
EPI_ISL_549162Viken
EPI_ISL_549163Viken
EPI_ISL_549164Viken
EPI_ISL_549165Viken
EPI_ISL_549166Viken
EPI_ISL_549167Viken
EPI_ISL_549168Viken
EPI_ISL_549169Viken
EPI_ISL_549170Viken
EPI_ISL_549171Viken
EPI_ISL_549172Viken
EPI_ISL_549173Viken
EPI_ISL_549174Viken
EPI_ISL_549175Viken
EPI_ISL_590879Viken
EPI_ISL_590880Viken
EPI_ISL_590882Viken
EPI_ISL_590889Viken
EPI_ISL_590890Viken
EPI_ISL_590891Viken
EPI_ISL_590892Viken
EPI_ISL_590894Viken
EPI_ISL_590895Viken
EPI_ISL_590896Viken
EPI_ISL_590897Viken
EPI_ISL_590898Viken
EPI_ISL_590921Viken
EPI_ISL_590922Viken
EPI_ISL_590929Viken
EPI_ISL_590931Viken
EPI_ISL_590932Viken
EPI_ISL_590933Viken
EPI_ISL_590945Viken
EPI_ISL_590948Viken
EPI_ISL_590982Viken
EPI_ISL_590986Viken
EPI_ISL_590987Viken
EPI_ISL_590988Viken
EPI_ISL_590989Viken
EPI_ISL_590990Viken
EPI_ISL_590991Viken
EPI_ISL_590992Viken
EPI_ISL_590993Viken
EPI_ISL_590994Viken
EPI_ISL_590995Viken
EPI_ISL_590996Viken
EPI_ISL_590997Viken
EPI_ISL_590998Viken
EPI_ISL_590999Viken
EPI_ISL_591000Viken
EPI_ISL_591001Viken
EPI_ISL_591002Viken
EPI_ISL_591003Viken
EPI_ISL_591004Viken
EPI_ISL_591005Viken
EPI_ISL_591006Viken
EPI_ISL_591009Viken
EPI_ISL_591015Viken
EPI_ISL_591016Viken
EPI_ISL_591017Viken

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