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Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Oct 25 07:18:47 2020 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Luxembourg

Number of isolates sequences available: 271

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
Luxembourg/Lux1/2020 EPI_ISL_4135932020-02-29
Luxembourg/LNS9371718/2020 EPI_ISL_4175262020-03-18
Luxembourg/LNS2848109/2020 EPI_ISL_4175272020-03-18
Luxembourg/LNS3694003/2020 EPI_ISL_4175282020-03-18
Luxembourg/LNS5731562/2020 EPI_ISL_4175292020-03-18
Luxembourg/LNS2128808/2020 EPI_ISL_4175302020-03-18
Luxembourg/LNS2013896/2020 EPI_ISL_4175312020-03-18
Luxembourg/LNS8489624/2020 EPI_ISL_4175322020-03-18
Luxembourg/LNS6282845/2020 EPI_ISL_4175332020-03-18
Luxembourg/LNS0158952/2020 EPI_ISL_4175342020-03-18
Luxembourg/LNS0000001/2020 EPI_ISL_4195622020-02-29
Luxembourg/LNS0156959/2020 EPI_ISL_4195632020-03-12
Luxembourg/LNS0366116/2020 EPI_ISL_4195642020-03-15
Luxembourg/LNS0591129/2020 EPI_ISL_4195652020-03-09
Luxembourg/LNS0641910/2020 EPI_ISL_4195662020-03-05
Luxembourg/LNS0716877/2020 EPI_ISL_4195672020-03-15
Luxembourg/LNS0756270/2020 EPI_ISL_4195682020-03-14
Luxembourg/LNS0945359/2020 EPI_ISL_4195692020-03-07
Luxembourg/LNS1234709/2020 EPI_ISL_4195702020-03-12
Luxembourg/LNS1612000/2020 EPI_ISL_4195712020-03-06
Luxembourg/LNS1870254/2020 EPI_ISL_4195722020-03-10
Luxembourg/LNS1874423/2020 EPI_ISL_4195732020-03-11
Luxembourg/LNS1909273/2020 EPI_ISL_4195742020-03-16
Luxembourg/LNS1918658/2020 EPI_ISL_4195752020-03-14
Luxembourg/LNS2151006/2020 EPI_ISL_4195762020-03-17
Luxembourg/LNS2247193/2020 EPI_ISL_4195772020-03-12
Luxembourg/LNS2614631/2020 EPI_ISL_4195782020-03-08
Luxembourg/LNS2886370/2020 EPI_ISL_4195792020-03-14
Luxembourg/LNS2907333/2020 EPI_ISL_4195802020-03-12
Luxembourg/LNS3089015/2020 EPI_ISL_4195812020-03-11
Luxembourg/LNS3156434/2020 EPI_ISL_4195822020-03-13
Luxembourg/LNS3588186/2020 EPI_ISL_4195832020-03-15
Luxembourg/LNS3711853/2020 EPI_ISL_4195842020-03-13
Luxembourg/LNS3879580/2020 EPI_ISL_4195852020-03-14
Luxembourg/LNS4134806/2020 EPI_ISL_4195862020-03-14
Luxembourg/LNS4691488/2020 EPI_ISL_4195872020-03-11
Luxembourg/LNS4836560/2020 EPI_ISL_4195882020-03-16
Luxembourg/LNS4845603/2020 EPI_ISL_4195892020-03-15
Luxembourg/LNS5032431/2020 EPI_ISL_4195902020-03-11
Luxembourg/LNS5228153/2020 EPI_ISL_4195912020-03-14
Luxembourg/LNS5440244/2020 EPI_ISL_4195922020-03-15
Luxembourg/LNS6603085/2020 EPI_ISL_4195932020-03-16
Luxembourg/LNS7537751/2020 EPI_ISL_4195942020-03-16
Luxembourg/LNS7753431/2020 EPI_ISL_4195952020-03-12
Luxembourg/LNS7866283/2020 EPI_ISL_4195962020-03-12
Luxembourg/LNS7928872/2020 EPI_ISL_4195972020-03-15
Luxembourg/LNS8188502/2020 EPI_ISL_4195982020-03-14
Luxembourg/LNS8639502/2020 EPI_ISL_4195992020-03-16
Luxembourg/LNS9080444/2020 EPI_ISL_4196002020-03-13
Luxembourg/LNS9086704/2020 EPI_ISL_4196012020-03-15
Luxembourg/LNS9324837/2020 EPI_ISL_4196022020-03-12
Luxembourg/LNS9512434/2020 EPI_ISL_4196032020-03-16
Luxembourg/LNS9627078/2020 EPI_ISL_4196042020-03-15
Luxembourg/LNS9652104/2020 EPI_ISL_4196052020-03-12
Luxembourg/LNS9862689/2020 EPI_ISL_4196062020-03-11
Luxembourg/LNS9982497/2020 EPI_ISL_4196072020-03-14
Luxembourg/LNS7970956/2020 EPI_ISL_4217342020-03-17
Luxembourg/LNS3307371/2020 EPI_ISL_4217352020-03-17
Luxembourg/LNS7687858/2020 EPI_ISL_4217362020-03-17
Luxembourg/LNS2334563/2020 EPI_ISL_4217372020-03-17
Luxembourg/LNS3404815/2020 EPI_ISL_4217382020-03-17
Luxembourg/LNS8746229/2020 EPI_ISL_4217392020-03-17
Luxembourg/LNS1644489/2020 EPI_ISL_4217402020-03-17
Luxembourg/LNS6689955/2020 EPI_ISL_4217412020-03-17
Luxembourg/LNS6500589/2020 EPI_ISL_4217422020-03-17
Luxembourg/LNS0272441/2020 EPI_ISL_4217432020-03-17
Luxembourg/LNS7074589/2020 EPI_ISL_4217442020-03-17
Luxembourg/LNS2299410/2020 EPI_ISL_4217452020-03-17
Luxembourg/LNS0819394/2020 EPI_ISL_4217462020-03-17
Luxembourg/LNS3770609/2020 EPI_ISL_4217472020-03-17
Luxembourg/LNS3052946/2020 EPI_ISL_4217482020-03-17
Luxembourg/LNS0877496/2020 EPI_ISL_4217492020-03-17
Luxembourg/LNS3035957/2020 EPI_ISL_4217502020-03-17
Luxembourg/LNS7007050/2020 EPI_ISL_4217512020-03-17
Luxembourg/LNS4569788/2020 EPI_ISL_4217522020-03-17
Luxembourg/LNS7991123/2020 EPI_ISL_4217532020-03-17
Luxembourg/LNS0814536/2020 EPI_ISL_4217542020-03-17
Luxembourg/LNS6897699/2020 EPI_ISL_4217552020-03-17
Luxembourg/LNS8124566/2020 EPI_ISL_4217562020-03-17
Luxembourg/LNS7914820/2020 EPI_ISL_4217572020-03-17
Luxembourg/LNS1586597/2020 EPI_ISL_4217582020-03-17
Luxembourg/LNS4235576/2020 EPI_ISL_4217592020-03-17
Luxembourg/LNS2458673/2020 EPI_ISL_4217602020-03-17
Luxembourg/LNS8602041/2020 EPI_ISL_4217612020-03-17
Luxembourg/LNS9510711/2020 EPI_ISL_4217622020-03-17
Luxembourg/LNS0074148/2020 EPI_ISL_4217632020-03-17
Luxembourg/LNS3259987/2020 EPI_ISL_4289392020-04-01
Luxembourg/LNS7841004/2020 EPI_ISL_4289402020-04-02
Luxembourg/LNS4885848/2020 EPI_ISL_4289412020-04-03
Luxembourg/LNS0113568/2020 EPI_ISL_4289422020-04-04
Luxembourg/LNS6969569/2020 EPI_ISL_4289432020-04-01
Luxembourg/LNS1387711/2020 EPI_ISL_4289442020-04-01
Luxembourg/LNS3702558/2020 EPI_ISL_4289452020-04-03
Luxembourg/LNS1222966/2020 EPI_ISL_4289462020-04-02
Luxembourg/LNS6175058/2020 EPI_ISL_4289472020-04-02
Luxembourg/LNS0522318/2020 EPI_ISL_4289482020-04-04
Luxembourg/LNS0078676/2020 EPI_ISL_4289492020-04-03
Luxembourg/LNS1660038/2020 EPI_ISL_4289502020-04-01
Luxembourg/LNS4271201/2020 EPI_ISL_4289512020-04-02
Luxembourg/LNS0516520/2020 EPI_ISL_4289522020-04-01
Luxembourg/LNS1314000/2020 EPI_ISL_4289532020-04-04
Luxembourg/LNS5971805/2020 EPI_ISL_4289542020-04-05
Luxembourg/LNS0102413/2020 EPI_ISL_4289552020-04-01
Luxembourg/LNS6854244/2020 EPI_ISL_4289562020-04-01
Luxembourg/LNS5444595/2020 EPI_ISL_4289572020-04-07
Luxembourg/LNS5413802/2020 EPI_ISL_4289582020-04-07
Luxembourg/LNS4295690/2020 EPI_ISL_4289592020-04-01
Luxembourg/LNS6326231/2020 EPI_ISL_4289602020-04-02
Luxembourg/LNS9322962/2020 EPI_ISL_4289612020-04-03
Luxembourg/LNS6274573/2020 EPI_ISL_4289622020-04-06
Luxembourg/LNS3652733/2020 EPI_ISL_4297062020-04-09
Luxembourg/LNS4641661/2020 EPI_ISL_4297072020-03-18
Luxembourg/LNS9579356/2020 EPI_ISL_4297082020-03-30
Luxembourg/LNS8545083/2020 EPI_ISL_4297092020-03-19
Luxembourg/LNS5041225/2020 EPI_ISL_4297102020-03-28
Luxembourg/LNS5519604/2020 EPI_ISL_4297112020-03-20
Luxembourg/LNS1583223/2020 EPI_ISL_4297122020-03-24
Luxembourg/LNS9831617/2020 EPI_ISL_4297132020-04-08
Luxembourg/LNS9056474/2020 EPI_ISL_4297142020-04-08
Luxembourg/LNS7469301/2020 EPI_ISL_4297152020-03-23
Luxembourg/LNS7032690/2020 EPI_ISL_4297162020-03-29
Luxembourg/LNS5069629/2020 EPI_ISL_4297172020-03-31
Luxembourg/LNS1995247/2020 EPI_ISL_4297182020-03-19
Luxembourg/LNS0180938/2020 EPI_ISL_4297192020-03-28
Luxembourg/LNS7863981/2020 EPI_ISL_4297202020-03-26
Luxembourg/LNS1891988/2020 EPI_ISL_4297212020-03-31
Luxembourg/LNS6137379/2020 EPI_ISL_4297222020-04-01
Luxembourg/LNS5277361/2020 EPI_ISL_4297232020-03-22
Luxembourg/LNS9984061/2020 EPI_ISL_4297242020-03-19
Luxembourg/LNS0756265/2020 EPI_ISL_4297252020-03-30
Luxembourg/LNS3829840/2020 EPI_ISL_4297262020-03-26
Luxembourg/LNS9102295/2020 EPI_ISL_4297272020-03-19
Luxembourg/LNS3212178/2020 EPI_ISL_4297282020-03-26
Luxembourg/LNS0481305/2020 EPI_ISL_4297292020-03-22
Luxembourg/LNS7438855/2020 EPI_ISL_4297302020-04-09
Luxembourg/LNS6264620/2020 EPI_ISL_4297312020-03-31
Luxembourg/LNS7580831/2020 EPI_ISL_4297322020-03-23
Luxembourg/LNS4423730/2020 EPI_ISL_4297332020-03-22
Luxembourg/LNS6783622/2020 EPI_ISL_4297342020-03-20
Luxembourg/LNS5358505/2020 EPI_ISL_4297352020-03-20
Luxembourg/LNS7640155/2020 EPI_ISL_4297362020-03-29
Luxembourg/LNS4254328/2020 EPI_ISL_4297372020-03-24
Luxembourg/LNS5488745/2020 EPI_ISL_4297382020-03-18
Luxembourg/LNS2696129/2020 EPI_ISL_4297392020-04-09
Luxembourg/LNS5549490/2020 EPI_ISL_4297402020-03-25
Luxembourg/LNS6533667/2020 EPI_ISL_4297412020-03-28
Luxembourg/LNS1658150/2020 EPI_ISL_4297422020-04-10
Luxembourg/LNS6325758/2020 EPI_ISL_4297432020-03-29
Luxembourg/LNS7341568/2020 EPI_ISL_4297442020-03-24
Luxembourg/LNS6344924/2020 EPI_ISL_4297452020-03-30
Luxembourg/LNS2913521/2020 EPI_ISL_4297462020-03-26
Luxembourg/LNS7174465/2020 EPI_ISL_4297472020-03-28
Luxembourg/LNS4830703/2020 EPI_ISL_4297482020-03-18
Luxembourg/LNS3989293/2020 EPI_ISL_4297492020-03-24
Luxembourg/LNS9598665/2020 EPI_ISL_4297502020-03-18
Luxembourg/LNS4576534/2020 EPI_ISL_4297512020-03-28
Luxembourg/LNS5664245/2020 EPI_ISL_4297522020-03-26
Luxembourg/LNS4245799/2020 EPI_ISL_4297532020-03-24
Luxembourg/LNS8648492/2020 EPI_ISL_4297542020-03-26
Luxembourg/LNS8772889/2020 EPI_ISL_4297552020-03-29
Luxembourg/LNS4946091/2020 EPI_ISL_4297562020-03-27
Luxembourg/LNS7006156/2020 EPI_ISL_4297572020-03-24
Luxembourg/LNS8167314/2020 EPI_ISL_4297582020-03-24
Luxembourg/LNS9455951/2020 EPI_ISL_4297592020-03-24
Luxembourg/LNS0211710/2020 EPI_ISL_4297602020-03-22
Luxembourg/LNS0744902/2020 EPI_ISL_4297612020-03-27
Luxembourg/LNS6277439/2020 EPI_ISL_4297622020-03-22
Luxembourg/LNS0610683/2020 EPI_ISL_4297632020-03-28
Luxembourg/LNS1703112/2020 EPI_ISL_4297642020-04-09
Luxembourg/LNS5723911/2020 EPI_ISL_4297652020-03-22
Luxembourg/LNS0814393/2020 EPI_ISL_4297662020-03-23
Luxembourg/LNS3437586/2020 EPI_ISL_4297672020-03-25
Luxembourg/LNS1055944/2020 EPI_ISL_4297682020-03-23
Luxembourg/LNS7721101/2020 EPI_ISL_4297692020-03-28
Luxembourg/LNS4530810/2020 EPI_ISL_4297702020-03-28
Luxembourg/LNS3187147/2020 EPI_ISL_4297712020-03-23
Luxembourg/LNS4107430/2020 EPI_ISL_4297722020-03-28
Luxembourg/LNS3257811/2020 EPI_ISL_4297732020-04-09
Luxembourg/LNS5611124/2020 EPI_ISL_4297742020-03-23
Luxembourg/LNS7299024/2020 EPI_ISL_4297752020-03-23
Luxembourg/LNS8726389/2020 EPI_ISL_4297762020-03-23
Luxembourg/LNS0994857/2020 EPI_ISL_4297772020-03-24
Luxembourg/LNS2580723/2020 EPI_ISL_4297782020-03-22
Luxembourg/LNS7357097/2020 EPI_ISL_4297792020-03-26
Luxembourg/LNS5680075/2020 EPI_ISL_4297802020-03-26
Luxembourg/LNS0709551/2020 EPI_ISL_4297812020-03-23
Luxembourg/LNS3169999/2020 EPI_ISL_4297822020-03-29
Luxembourg/LNS9207105/2020 EPI_ISL_4297832020-03-27
Luxembourg/LNS5677421/2020 EPI_ISL_4297842020-03-27
Luxembourg/LNS7729363/2020 EPI_ISL_4297852020-04-09
Luxembourg/LNS4818581/2020 EPI_ISL_4297862020-03-31
Luxembourg/LNS3283768/2020 EPI_ISL_4297872020-03-22
Luxembourg/LNS8323413/2020 EPI_ISL_4297882020-03-27
Luxembourg/LNS9075207/2020 EPI_ISL_4297892020-03-31
Luxembourg/LNS4719278/2020 EPI_ISL_4297902020-03-27
Luxembourg/LNS7007586/2020 EPI_ISL_4297912020-03-28
Luxembourg/LNS7812353/2020 EPI_ISL_4297932020-03-27
Luxembourg/LNS6479831/2020 EPI_ISL_4297942020-03-31
Luxembourg/LNS8815434/2020 EPI_ISL_4297952020-03-26
Luxembourg/LNS8367209/2020 EPI_ISL_4297962020-04-08
Luxembourg/LNS0687874/2020 EPI_ISL_4297972020-03-30
Luxembourg/LNS9932514/2020 EPI_ISL_4297982020-03-20
Luxembourg/LNS4284220/2020 EPI_ISL_4297992020-03-30
Luxembourg/LNS5372169/2020 EPI_ISL_4298002020-03-20
EPI_ISL_434487
EPI_ISL_434488
EPI_ISL_434489
EPI_ISL_434490
EPI_ISL_434491
EPI_ISL_434492
EPI_ISL_434493
EPI_ISL_434494
EPI_ISL_434495
EPI_ISL_434496
EPI_ISL_434497
EPI_ISL_434498
EPI_ISL_434499
EPI_ISL_434500
EPI_ISL_434501
EPI_ISL_434502
EPI_ISL_434503
EPI_ISL_434504
EPI_ISL_434505
EPI_ISL_434506
EPI_ISL_434507
EPI_ISL_434508
EPI_ISL_434509
EPI_ISL_434510
EPI_ISL_434511
EPI_ISL_434512
EPI_ISL_434513
EPI_ISL_434514
EPI_ISL_434515
EPI_ISL_445053
EPI_ISL_445054
EPI_ISL_445055
EPI_ISL_445056
EPI_ISL_445057
EPI_ISL_445058
EPI_ISL_445059
EPI_ISL_445060
EPI_ISL_445061
EPI_ISL_445062
EPI_ISL_445063
EPI_ISL_445064
EPI_ISL_445065
EPI_ISL_445066
EPI_ISL_445067
EPI_ISL_445068
EPI_ISL_445069
EPI_ISL_445070
EPI_ISL_445071
EPI_ISL_445072
EPI_ISL_445073
EPI_ISL_445074
EPI_ISL_445075
EPI_ISL_445076
EPI_ISL_459893
EPI_ISL_459894
EPI_ISL_459895
EPI_ISL_459896
EPI_ISL_459897
EPI_ISL_459898
EPI_ISL_459899
EPI_ISL_459900
EPI_ISL_459901
EPI_ISL_459902
EPI_ISL_459903
EPI_ISL_459904
EPI_ISL_459905
EPI_ISL_459906

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