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Status of SARS-CoV-2 detection systems (RT-PCR)
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Update: Sun Jan 31 07:00:30 2021 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Kuwait

Number of isolates sequences available: 27

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
EPI_ISL_745191The sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not available
EPI_ISL_746320The sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not available
EPI_ISL_746322The sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not available
Kuwait/KU09/2020 EPI_ISL_416541Dasman2020-03-02
Kuwait/KU17/2020 EPI_ISL_416542Dasman2020-03-02
Kuwait/KU18/2020 EPI_ISL_416543Dasman2020-03-02
Kuwait/KU001/2020 EPI_ISL_421652Dasman2020-03-16
Kuwait/KU006/2020 EPI_ISL_422424Dasman2020-03-15
Kuwait/KU005/2020 EPI_ISL_422426Dasman2020-03-16
Kuwait/KU008/2020 EPI_ISL_422427Dasman2020-03-16
Kuwait/KU12/2020 EPI_ISL_416458Hawali2020-03-02
EPI_ISL_807157HawallyThe sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not availableThe sequence is not available
EPI_ISL_903375Kuwait City
EPI_ISL_903376Kuwait City
EPI_ISL_903377Kuwait City
EPI_ISL_903378Kuwait City
EPI_ISL_903379Kuwait City
EPI_ISL_903380Kuwait City
EPI_ISL_903381Kuwait City
EPI_ISL_903382Kuwait City
EPI_ISL_903383Kuwait City
EPI_ISL_903384Kuwait City
EPI_ISL_903385Kuwait City
EPI_ISL_903386Kuwait City
EPI_ISL_903387Kuwait City
EPI_ISL_903388Kuwait City
EPI_ISL_903389Kuwait City

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