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Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Oct 25 07:18:47 2020 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Israel

Number of isolates sequences available: 402

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
EPI_ISL_435284
EPI_ISL_435286
EPI_ISL_435287
EPI_ISL_435289
EPI_ISL_435291
EPI_ISL_435292
EPI_ISL_447250
EPI_ISL_447251
EPI_ISL_474971
EPI_ISL_474973
EPI_ISL_474978
EPI_ISL_474980
EPI_ISL_474991
EPI_ISL_475012
EPI_ISL_475013
EPI_ISL_475014
EPI_ISL_475016
EPI_ISL_475019
EPI_ISL_475023
EPI_ISL_514306
EPI_ISL_514312
EPI_ISL_514313
EPI_ISL_514316
EPI_ISL_516901
EPI_ISL_474961Ashdod
EPI_ISL_474958Bat-Yam
EPI_ISL_474976Bat-Yam
EPI_ISL_474977Bat-Yam
EPI_ISL_474989Beit Shemesh
EPI_ISL_474962Beni-Brak
EPI_ISL_474964Beni-Brak
EPI_ISL_474967Beni-Brak
EPI_ISL_474968Beni-Brak
EPI_ISL_474972Beni-Brak
EPI_ISL_514305Central District
EPI_ISL_514308Central District
EPI_ISL_514309Central District
EPI_ISL_514310Central District
EPI_ISL_516918Central District
EPI_ISL_575332Central region
EPI_ISL_575333Central region
EPI_ISL_475002Elad
EPI_ISL_475003Elkana
EPI_ISL_474970Gani Tikva
EPI_ISL_475000Gedera
EPI_ISL_475015Haifa
EPI_ISL_516902Haifa District
EPI_ISL_516907Haifa District
EPI_ISL_516908Haifa District
EPI_ISL_516911Haifa District
EPI_ISL_516912Haifa District
EPI_ISL_516913Haifa District
EPI_ISL_516915Haifa District
EPI_ISL_474959Holon
EPI_ISL_474982Holon
EPI_ISL_474990Holon
EPI_ISL_474974Hukuk
EPI_ISL_474984Jerusalem
EPI_ISL_474996Jerusalem
EPI_ISL_474998Jerusalem
EPI_ISL_475004Jerusalem
EPI_ISL_475005Jerusalem
EPI_ISL_475006Jerusalem
EPI_ISL_475007Jerusalem
EPI_ISL_475009Jerusalem
EPI_ISL_475011Jerusalem
EPI_ISL_475020Jerusalem
EPI_ISL_475024Jerusalem
EPI_ISL_475025Jerusalem
EPI_ISL_447313Jerusalem District
EPI_ISL_447331Jerusalem District
EPI_ISL_447332Jerusalem District
EPI_ISL_447333Jerusalem District
EPI_ISL_447334Jerusalem District
EPI_ISL_447339Jerusalem District
EPI_ISL_447341Jerusalem District
EPI_ISL_447342Jerusalem District
EPI_ISL_447343Jerusalem District
EPI_ISL_447344Jerusalem District
EPI_ISL_447345Jerusalem District
EPI_ISL_447347Jerusalem District
EPI_ISL_447348Jerusalem District
EPI_ISL_447349Jerusalem District
EPI_ISL_447350Jerusalem District
EPI_ISL_447351Jerusalem District
EPI_ISL_447352Jerusalem District
EPI_ISL_447353Jerusalem District
EPI_ISL_447354Jerusalem District
EPI_ISL_447355Jerusalem District
EPI_ISL_447356Jerusalem District
EPI_ISL_447357Jerusalem District
EPI_ISL_447358Jerusalem District
EPI_ISL_447359Jerusalem District
EPI_ISL_447360Jerusalem District
EPI_ISL_447361Jerusalem District
EPI_ISL_447362Jerusalem District
EPI_ISL_447363Jerusalem District
EPI_ISL_447364Jerusalem District
EPI_ISL_447365Jerusalem District
EPI_ISL_447366Jerusalem District
EPI_ISL_447367Jerusalem District
EPI_ISL_447368Jerusalem District
EPI_ISL_447369Jerusalem District
EPI_ISL_447370Jerusalem District
EPI_ISL_447371Jerusalem District
EPI_ISL_447372Jerusalem District
EPI_ISL_447373Jerusalem District
EPI_ISL_447374Jerusalem District
EPI_ISL_447375Jerusalem District
EPI_ISL_447376Jerusalem District
EPI_ISL_447377Jerusalem District
EPI_ISL_447378Jerusalem District
EPI_ISL_447379Jerusalem District
EPI_ISL_447380Jerusalem District
EPI_ISL_447381Jerusalem District
EPI_ISL_447382Jerusalem District
EPI_ISL_447407Jerusalem District
EPI_ISL_447408Jerusalem District
EPI_ISL_447409Jerusalem District
EPI_ISL_447410Jerusalem District
EPI_ISL_447411Jerusalem District
EPI_ISL_447412Jerusalem District
EPI_ISL_447413Jerusalem District
EPI_ISL_447414Jerusalem District
EPI_ISL_447419Jerusalem District
EPI_ISL_447423Jerusalem District
EPI_ISL_447433Jerusalem District
EPI_ISL_447434Jerusalem District
EPI_ISL_447439Jerusalem District
EPI_ISL_514266Jerusalem District
EPI_ISL_514267Jerusalem District
EPI_ISL_514268Jerusalem District
EPI_ISL_514269Jerusalem District
EPI_ISL_514270Jerusalem District
EPI_ISL_514271Jerusalem District
EPI_ISL_514272Jerusalem District
EPI_ISL_514273Jerusalem District
EPI_ISL_514274Jerusalem District
EPI_ISL_514275Jerusalem District
EPI_ISL_514276Jerusalem District
EPI_ISL_514277Jerusalem District
EPI_ISL_514278Jerusalem District
EPI_ISL_514279Jerusalem District
EPI_ISL_514280Jerusalem District
EPI_ISL_514281Jerusalem District
EPI_ISL_514282Jerusalem District
EPI_ISL_514283Jerusalem District
EPI_ISL_514284Jerusalem District
EPI_ISL_514285Jerusalem District
EPI_ISL_514286Jerusalem District
EPI_ISL_514287Jerusalem District
EPI_ISL_514288Jerusalem District
EPI_ISL_514289Jerusalem District
EPI_ISL_514290Jerusalem District
EPI_ISL_514291Jerusalem District
EPI_ISL_514292Jerusalem District
EPI_ISL_514293Jerusalem District
EPI_ISL_514294Jerusalem District
EPI_ISL_514295Jerusalem District
EPI_ISL_514296Jerusalem District
EPI_ISL_514297Jerusalem District
EPI_ISL_514298Jerusalem District
EPI_ISL_514300Jerusalem District
EPI_ISL_514301Jerusalem District
EPI_ISL_514302Jerusalem District
EPI_ISL_514303Jerusalem District
EPI_ISL_514307Jerusalem District
EPI_ISL_474995Kefar Sava
EPI_ISL_483701Kfar Saba
EPI_ISL_483704Kfar Saba
EPI_ISL_483706Kfar Saba
EPI_ISL_483708Kfar Saba
EPI_ISL_483709Kfar Saba
EPI_ISL_483711Kfar Saba
EPI_ISL_483712Kfar Saba
EPI_ISL_483713Kfar Saba
EPI_ISL_483714Kfar Saba
EPI_ISL_483715Kfar Saba
EPI_ISL_483716Kfar Saba
EPI_ISL_483717Kfar Saba
EPI_ISL_483718Kfar Saba
EPI_ISL_483719Kfar Saba
EPI_ISL_483720Kfar Saba
EPI_ISL_483721Kfar Saba
EPI_ISL_483722Kfar Saba
EPI_ISL_483723Kfar Saba
EPI_ISL_483724Kfar Saba
EPI_ISL_483725Kfar Saba
EPI_ISL_474993Kfar-Habad
EPI_ISL_474994Kiryat Ono
EPI_ISL_474985Kiryat-Gat
EPI_ISL_475008Maalot-Tarshicha
EPI_ISL_474965Netanya
EPI_ISL_474966Netivot
EPI_ISL_447328North District
EPI_ISL_447335North District
EPI_ISL_447383North District
EPI_ISL_447384North District
EPI_ISL_447385North District
EPI_ISL_447386North District
EPI_ISL_447387North District
EPI_ISL_447388North District
EPI_ISL_447389North District
EPI_ISL_447390North District
EPI_ISL_447391North District
EPI_ISL_447392North District
EPI_ISL_447393North District
EPI_ISL_447394North District
EPI_ISL_447395North District
EPI_ISL_447396North District
EPI_ISL_447397North District
EPI_ISL_447398North District
EPI_ISL_447399North District
EPI_ISL_447400North District
EPI_ISL_447401North District
EPI_ISL_447402North District
EPI_ISL_447403North District
EPI_ISL_447404North District
EPI_ISL_447405North District
EPI_ISL_447406North District
EPI_ISL_447417North District
EPI_ISL_447418North District
EPI_ISL_447452North District
EPI_ISL_514314Northern District
EPI_ISL_516903Northern District
EPI_ISL_516904Northern District
EPI_ISL_516905Northern District
EPI_ISL_516906Northern District
EPI_ISL_516910Northern District
EPI_ISL_516914Northern District
EPI_ISL_516916Northern District
EPI_ISL_516917Northern District
EPI_ISL_516919Northern District
EPI_ISL_516920Northern District
EPI_ISL_516921Northern District
EPI_ISL_575334Northern District
EPI_ISL_474979Pardesia
EPI_ISL_474992Petah-Tikva
EPI_ISL_474975Raanana
EPI_ISL_474981Raanana
Israel/ISR_IT0320/2020 EPI_ISL_419210Ramat Gan2020-03-01
Israel/ISR_JP0320/2020 EPI_ISL_419211Ramat Gan2020-02-23
EPI_ISL_474983Ramat-Gan
EPI_ISL_474999Ramat-Gan
EPI_ISL_475010Ramla
EPI_ISL_474986Shoam
EPI_ISL_447258South Coast District
EPI_ISL_447259South Coast District
EPI_ISL_447260South Coast District
EPI_ISL_447261South Coast District
EPI_ISL_447262South Coast District
EPI_ISL_447263South Coast District
EPI_ISL_447264South Coast District
EPI_ISL_447265South Coast District
EPI_ISL_447266South Coast District
EPI_ISL_447267South Coast District
EPI_ISL_447268South Coast District
EPI_ISL_447269South Coast District
EPI_ISL_447270South Coast District
EPI_ISL_447271South Coast District
EPI_ISL_447272South Coast District
EPI_ISL_447273South Coast District
EPI_ISL_447274South Coast District
EPI_ISL_447275South Coast District
EPI_ISL_447276South Coast District
EPI_ISL_447277South Coast District
EPI_ISL_447278South Coast District
EPI_ISL_447279South Coast District
EPI_ISL_447280South Coast District
EPI_ISL_447281South Coast District
EPI_ISL_447282South Coast District
EPI_ISL_447283South Coast District
EPI_ISL_447284South Coast District
EPI_ISL_447285South Coast District
EPI_ISL_447286South Coast District
EPI_ISL_447287South Coast District
EPI_ISL_447288South Coast District
EPI_ISL_447289South Coast District
EPI_ISL_447290South Coast District
EPI_ISL_447291South Coast District
EPI_ISL_447292South Coast District
EPI_ISL_447293South Coast District
EPI_ISL_447294South Coast District
EPI_ISL_447295South Coast District
EPI_ISL_447296South Coast District
EPI_ISL_447297South Coast District
EPI_ISL_447298South Coast District
EPI_ISL_447299South Coast District
EPI_ISL_447300South Coast District
EPI_ISL_447301South Coast District
EPI_ISL_447302South Coast District
EPI_ISL_447303South Coast District
EPI_ISL_447304South Coast District
EPI_ISL_447305South Coast District
EPI_ISL_447306South Coast District
EPI_ISL_447307South Coast District
EPI_ISL_447308South Coast District
EPI_ISL_447309South Coast District
EPI_ISL_447310South Coast District
EPI_ISL_447325South Coast District
EPI_ISL_447326South Coast District
EPI_ISL_447424South Coast District
EPI_ISL_447425South Coast District
EPI_ISL_447435South Coast District
EPI_ISL_447436South Coast District
EPI_ISL_447437South Coast District
EPI_ISL_447315South District
EPI_ISL_447317South District
EPI_ISL_447318South District
EPI_ISL_447319South District
EPI_ISL_447320South District
EPI_ISL_447321South District
EPI_ISL_447322South District
EPI_ISL_447323South District
EPI_ISL_447324South District
EPI_ISL_447327South District
EPI_ISL_447329South District
EPI_ISL_516909Southern Coast District
EPI_ISL_514315Southern District
EPI_ISL_516884Tel Aviv
EPI_ISL_516885Tel Aviv
EPI_ISL_516886Tel Aviv
EPI_ISL_516887Tel Aviv
EPI_ISL_516888Tel Aviv
EPI_ISL_516889Tel Aviv
EPI_ISL_516890Tel Aviv
EPI_ISL_516891Tel Aviv
EPI_ISL_516892Tel Aviv
EPI_ISL_516893Tel Aviv
EPI_ISL_516894Tel Aviv
EPI_ISL_516895Tel Aviv
EPI_ISL_516896Tel Aviv
EPI_ISL_516897Tel Aviv
EPI_ISL_516898Tel Aviv
EPI_ISL_516899Tel Aviv
EPI_ISL_516900Tel Aviv
EPI_ISL_447311Tel Aviv District
EPI_ISL_447312Tel Aviv District
EPI_ISL_447314Tel Aviv District
EPI_ISL_447316Tel Aviv District
EPI_ISL_447330Tel Aviv District
EPI_ISL_447336Tel Aviv District
EPI_ISL_447337Tel Aviv District
EPI_ISL_447338Tel Aviv District
EPI_ISL_447340Tel Aviv District
EPI_ISL_447346Tel Aviv District
EPI_ISL_447415Tel Aviv District
EPI_ISL_447416Tel Aviv District
EPI_ISL_447420Tel Aviv District
EPI_ISL_447421Tel Aviv District
EPI_ISL_447422Tel Aviv District
EPI_ISL_447426Tel Aviv District
EPI_ISL_447427Tel Aviv District
EPI_ISL_447428Tel Aviv District
EPI_ISL_447429Tel Aviv District
EPI_ISL_447430Tel Aviv District
EPI_ISL_447431Tel Aviv District
EPI_ISL_447432Tel Aviv District
EPI_ISL_447438Tel Aviv District
EPI_ISL_447440Tel Aviv District
EPI_ISL_447441Tel Aviv District
EPI_ISL_447442Tel Aviv District
EPI_ISL_447443Tel Aviv District
EPI_ISL_447444Tel Aviv District
EPI_ISL_447445Tel Aviv District
EPI_ISL_447446Tel Aviv District
EPI_ISL_447447Tel Aviv District
EPI_ISL_447448Tel Aviv District
EPI_ISL_447449Tel Aviv District
EPI_ISL_447450Tel Aviv District
EPI_ISL_447451Tel Aviv District
EPI_ISL_447453Tel Aviv District
EPI_ISL_447454Tel Aviv District
EPI_ISL_447455Tel Aviv District
EPI_ISL_447456Tel Aviv District
EPI_ISL_447457Tel Aviv District
EPI_ISL_447458Tel Aviv District
EPI_ISL_447459Tel Aviv District
EPI_ISL_447460Tel Aviv District
EPI_ISL_447461Tel Aviv District
EPI_ISL_447462Tel Aviv District
EPI_ISL_447463Tel Aviv District
EPI_ISL_447464Tel Aviv District
EPI_ISL_447465Tel Aviv District
EPI_ISL_447466Tel Aviv District
EPI_ISL_447467Tel Aviv District
EPI_ISL_447468Tel Aviv District
EPI_ISL_447469Tel Aviv District
EPI_ISL_514299Tel Aviv District
EPI_ISL_514304Tel Aviv District
EPI_ISL_514311Tel Aviv District
EPI_ISL_474963Tel-Aviv
EPI_ISL_475001Tel-Aviv
EPI_ISL_475021Tel-Aviv
EPI_ISL_475022Tel-Aviv
EPI_ISL_475017Tirat Zvi
EPI_ISL_474997Tveria
EPI_ISL_474969Yavne
EPI_ISL_474987Yavne
EPI_ISL_474960Yehud
EPI_ISL_474988Yehud
EPI_ISL_475018Zefat

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