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Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Jan 10 05:32:46 2021 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Hungary

Number of isolates sequences available: 273

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
EPI_ISL_435422Balassagyarmat
EPI_ISL_435423Balassagyarmat
EPI_ISL_435424Balassagyarmat
EPI_ISL_435421Balatonfured
Hungary/mbl49/2020 EPI_ISL_416744Baranya2020-03-20
Hungary/mbl2/2020 EPI_ISL_418183Baranya2020-03-17
EPI_ISL_435403Baranya
EPI_ISL_435404Baranya
EPI_ISL_435405Baranya
EPI_ISL_435406Baranya
EPI_ISL_435407Baranya
EPI_ISL_435408Baranya
EPI_ISL_435409Baranya
EPI_ISL_435410Baranya
EPI_ISL_435411Baranya
EPI_ISL_435412Baranya
EPI_ISL_435413Baranya
EPI_ISL_435414Baranya
EPI_ISL_435415Baranya
EPI_ISL_435416Baranya
EPI_ISL_435417Baranya
EPI_ISL_435418Baranya
EPI_ISL_435419Baranya
EPI_ISL_483637Baranya
EPI_ISL_671414Baranya county
EPI_ISL_671415Baranya county
EPI_ISL_671417Baranya county
EPI_ISL_671418Baranya county
EPI_ISL_435428Bekesszentandras
EPI_ISL_526227Borsod-Abauj-Zemplen county
EPI_ISL_476072Borsod-Abaúj-Zemplén County
EPI_ISL_476076Borsod-Abaúj-Zemplén County
EPI_ISL_477009Borsod-Abaúj-Zemplén County
EPI_ISL_477011Borsod-Abaúj-Zemplén County
EPI_ISL_477012Borsod-Abaúj-Zemplén County
EPI_ISL_671429Borsod-Abaúj-Zemplén county
EPI_ISL_671430Borsod-Abaúj-Zemplén county
EPI_ISL_671442Borsod-Abaúj-Zemplén county
EPI_ISL_671443Borsod-Abaúj-Zemplén county
EPI_ISL_671444Borsod-Abaúj-Zemplén county
EPI_ISL_671445Borsod-Abaúj-Zemplén county
EPI_ISL_671446Borsod-Abaúj-Zemplén county
EPI_ISL_671447Borsod-Abaúj-Zemplén county
EPI_ISL_671448Borsod-Abaúj-Zemplén county
EPI_ISL_671455Borsod-Abaúj-Zemplén county
EPI_ISL_671456Borsod-Abaúj-Zemplén county
EPI_ISL_671458Borsod-Abaúj-Zemplén county
EPI_ISL_671459Borsod-Abaúj-Zemplén county
EPI_ISL_671460Borsod-Abaúj-Zemplén county
EPI_ISL_671461Borsod-Abaúj-Zemplén county
EPI_ISL_671465Borsod-Abaúj-Zemplén county
EPI_ISL_671466Borsod-Abaúj-Zemplén county
EPI_ISL_671467Borsod-Abaúj-Zemplén county
EPI_ISL_671468Borsod-Abaúj-Zemplén county
EPI_ISL_671469Borsod-Abaúj-Zemplén county
EPI_ISL_671470Borsod-Abaúj-Zemplén county
EPI_ISL_671471Borsod-Abaúj-Zemplén county
EPI_ISL_671472Borsod-Abaúj-Zemplén county
EPI_ISL_671474Borsod-Abaúj-Zemplén county
EPI_ISL_671475Borsod-Abaúj-Zemplén county
EPI_ISL_671493Borsod-Abaúj-Zemplén county
EPI_ISL_671494Borsod-Abaúj-Zemplén county
EPI_ISL_671495Borsod-Abaúj-Zemplén county
EPI_ISL_678387Borsod-Abaúj-Zemplén county
EPI_ISL_678388Borsod-Abaúj-Zemplén county
EPI_ISL_678389Borsod-Abaúj-Zemplén county
EPI_ISL_678390Borsod-Abaúj-Zemplén county
EPI_ISL_678391Borsod-Abaúj-Zemplén county
EPI_ISL_678392Borsod-Abaúj-Zemplén county
EPI_ISL_678393Borsod-Abaúj-Zemplén county
EPI_ISL_678394Borsod-Abaúj-Zemplén county
EPI_ISL_678395Borsod-Abaúj-Zemplén county
EPI_ISL_678396Borsod-Abaúj-Zemplén county
Hungary/mbl1/2020 EPI_ISL_416426Budapest2020-03-17
EPI_ISL_435420Budapest
EPI_ISL_477624Bács-Kiskun County
EPI_ISL_477625Bács-Kiskun County
EPI_ISL_677731Bács-Kiskun county
EPI_ISL_677732Bács-Kiskun county
EPI_ISL_677734Bács-Kiskun county
EPI_ISL_677738Bács-Kiskun county
EPI_ISL_677740Bács-Kiskun county
EPI_ISL_677743Bács-Kiskun county
EPI_ISL_677744Bács-Kiskun county
EPI_ISL_677760Bács-Kiskun county
EPI_ISL_677761Bács-Kiskun county
EPI_ISL_677777Bács-Kiskun county
EPI_ISL_677783Bács-Kiskun county
EPI_ISL_677784Bács-Kiskun county
EPI_ISL_677785Bács-Kiskun county
EPI_ISL_677786Bács-Kiskun county
EPI_ISL_677787Bács-Kiskun county
EPI_ISL_677788Bács-Kiskun county
EPI_ISL_677789Bács-Kiskun county
EPI_ISL_677790Bács-Kiskun county
EPI_ISL_677791Bács-Kiskun county
EPI_ISL_677792Bács-Kiskun county
EPI_ISL_677793Bács-Kiskun county
EPI_ISL_677801Bács-Kiskun county
EPI_ISL_677802Bács-Kiskun county
EPI_ISL_677803Bács-Kiskun county
EPI_ISL_677804Bács-Kiskun county
EPI_ISL_677805Bács-Kiskun county
EPI_ISL_677810Bács-Kiskun county
EPI_ISL_677811Bács-Kiskun county
EPI_ISL_677819Bács-Kiskun county
EPI_ISL_477620Békés County
EPI_ISL_477623Békés County
EPI_ISL_677727Békés county
EPI_ISL_677771Békés county
EPI_ISL_677794Békés county
EPI_ISL_677795Békés county
EPI_ISL_677796Békés county
EPI_ISL_677797Békés county
EPI_ISL_677798Békés county
EPI_ISL_677799Békés county
EPI_ISL_677800Békés county
EPI_ISL_677806Békés county
EPI_ISL_677807Békés county
EPI_ISL_677808Békés county
EPI_ISL_677809Békés county
EPI_ISL_677812Békés county
EPI_ISL_677813Békés county
EPI_ISL_677814Békés county
EPI_ISL_677815Békés county
EPI_ISL_678290Békés county
EPI_ISL_476078Csongrád County
EPI_ISL_477615Csongrád County
EPI_ISL_477616Csongrád County
EPI_ISL_477617Csongrád County
EPI_ISL_477618Csongrád County
EPI_ISL_477619Csongrád County
EPI_ISL_477621Csongrád County
EPI_ISL_477622Csongrád County
EPI_ISL_677729Csongrád county
EPI_ISL_677730Csongrád county
EPI_ISL_677735Csongrád county
EPI_ISL_677736Csongrád county
EPI_ISL_677737Csongrád county
EPI_ISL_677739Csongrád county
EPI_ISL_677741Csongrád county
EPI_ISL_677742Csongrád county
EPI_ISL_677746Csongrád county
EPI_ISL_677747Csongrád county
EPI_ISL_677748Csongrád county
EPI_ISL_677749Csongrád county
EPI_ISL_677750Csongrád county
EPI_ISL_677751Csongrád county
EPI_ISL_677752Csongrád county
EPI_ISL_677753Csongrád county
EPI_ISL_677754Csongrád county
EPI_ISL_677755Csongrád county
EPI_ISL_677756Csongrád county
EPI_ISL_677757Csongrád county
EPI_ISL_677758Csongrád county
EPI_ISL_677759Csongrád county
EPI_ISL_677762Csongrád county
EPI_ISL_677763Csongrád county
EPI_ISL_677764Csongrád county
EPI_ISL_677765Csongrád county
EPI_ISL_677766Csongrád county
EPI_ISL_677767Csongrád county
EPI_ISL_677768Csongrád county
EPI_ISL_677769Csongrád county
EPI_ISL_677770Csongrád county
EPI_ISL_677772Csongrád county
EPI_ISL_677773Csongrád county
EPI_ISL_677774Csongrád county
EPI_ISL_677775Csongrád county
EPI_ISL_677776Csongrád county
EPI_ISL_677778Csongrád county
EPI_ISL_677779Csongrád county
EPI_ISL_677780Csongrád county
EPI_ISL_677781Csongrád county
EPI_ISL_677782Csongrád county
EPI_ISL_677816Csongrád county
EPI_ISL_677817Csongrád county
EPI_ISL_677818Csongrád county
EPI_ISL_677820Csongrád county
EPI_ISL_678291Csongrád county
EPI_ISL_476069Debrecen
EPI_ISL_476071Debrecen
EPI_ISL_477010Debrecen
EPI_ISL_671438Győr-Moson-Sopron county
EPI_ISL_671420Hajdú-Bihar county
EPI_ISL_671421Hajdú-Bihar county
EPI_ISL_671422Hajdú-Bihar county
EPI_ISL_671423Hajdú-Bihar county
EPI_ISL_671424Hajdú-Bihar county
EPI_ISL_671425Hajdú-Bihar county
EPI_ISL_671426Hajdú-Bihar county
EPI_ISL_671427Hajdú-Bihar county
EPI_ISL_671433Hajdú-Bihar county
EPI_ISL_671434Hajdú-Bihar county
EPI_ISL_671436Hajdú-Bihar county
EPI_ISL_671437Hajdú-Bihar county
EPI_ISL_671439Hajdú-Bihar county
EPI_ISL_671440Hajdú-Bihar county
EPI_ISL_671441Hajdú-Bihar county
EPI_ISL_671449Hajdú-Bihar county
EPI_ISL_671454Hajdú-Bihar county
EPI_ISL_671478Hajdú-Bihar county
EPI_ISL_671479Hajdú-Bihar county
EPI_ISL_671481Hajdú-Bihar county
EPI_ISL_671482Hajdú-Bihar county
EPI_ISL_671484Hajdú-Bihar county
EPI_ISL_671485Hajdú-Bihar county
EPI_ISL_671486Hajdú-Bihar county
EPI_ISL_671487Hajdú-Bihar county
EPI_ISL_671488Hajdú-Bihar county
EPI_ISL_671489Hajdú-Bihar county
EPI_ISL_671490Hajdú-Bihar county
EPI_ISL_671491Hajdú-Bihar county
EPI_ISL_671492Hajdú-Bihar county
EPI_ISL_476068Heves County
EPI_ISL_476073Heves County
EPI_ISL_476074Heves County
EPI_ISL_476075Heves County
EPI_ISL_476077Heves County
EPI_ISL_671480Heves county
EPI_ISL_476070Jász-Nagykun-Szolnok county
EPI_ISL_435426Kecskemet
EPI_ISL_435430Kecskemet
EPI_ISL_435431Kecskemet
EPI_ISL_435427Oroshaza
EPI_ISL_526215Pest county
EPI_ISL_526216Pest county
EPI_ISL_526217Pest county
EPI_ISL_526218Pest county
EPI_ISL_526219Pest county
EPI_ISL_526220Pest county
EPI_ISL_526221Pest county
EPI_ISL_526222Pest county
EPI_ISL_526223Pest county
EPI_ISL_526224Pest county
EPI_ISL_526225Pest county
EPI_ISL_526226Pest county
EPI_ISL_526228Pest county
EPI_ISL_526229Pest county
EPI_ISL_526230Pest county
EPI_ISL_526231Pest county
EPI_ISL_526232Pest county
EPI_ISL_526233Pest county
EPI_ISL_526234Pest county
EPI_ISL_526235Pest county
EPI_ISL_526236Pest county
EPI_ISL_526237Pest county
EPI_ISL_526238Pest county
EPI_ISL_671473Pest county
EPI_ISL_677728Pest county
EPI_ISL_677733Pest county
EPI_ISL_677745Pest county
EPI_ISL_671416Somogy county
EPI_ISL_477008Szabolcs-Szatmár-Bereg County
EPI_ISL_477013Szabolcs-Szatmár-Bereg County
EPI_ISL_671419Szabolcs-Szatmár-Bereg county
EPI_ISL_671428Szabolcs-Szatmár-Bereg county
EPI_ISL_671431Szabolcs-Szatmár-Bereg county
EPI_ISL_671432Szabolcs-Szatmár-Bereg county
EPI_ISL_671435Szabolcs-Szatmár-Bereg county
EPI_ISL_671450Szabolcs-Szatmár-Bereg county
EPI_ISL_671451Szabolcs-Szatmár-Bereg county
EPI_ISL_671452Szabolcs-Szatmár-Bereg county
EPI_ISL_671453Szabolcs-Szatmár-Bereg county
EPI_ISL_671457Szabolcs-Szatmár-Bereg county
EPI_ISL_671476Szabolcs-Szatmár-Bereg county
EPI_ISL_671477Szabolcs-Szatmár-Bereg county
EPI_ISL_671483Szabolcs-Szatmár-Bereg county
EPI_ISL_435425Szeged
EPI_ISL_435429Szeged
EPI_ISL_671462Veszprém county
EPI_ISL_671463Veszprém county
EPI_ISL_671464Veszprém county

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