University of Turin logo DBIOS logo


Status of SARS-CoV-2 detection systems (RT-PCR)
enabled by data from GISAID logo


Update: Sun Oct 25 07:18:47 2020 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

Go to home

Democratic Republic of the Congo

Number of isolates sequences available: 353

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
DRC/431/2020 EPI_ISL_4208472020-03-26
EPI_ISL_471411Haut-Katanga
EPI_ISL_471412Haut-Katanga
EPI_ISL_471413Haut-Katanga
EPI_ISL_513597Haut-Katanga
DRC/KN-13/2020 EPI_ISL_414647Kinshasa2020-03-09
DRC/KN-0017/2020 EPI_ISL_417433Kinshasa2020-03-11
DRC/KN-0038/2020 EPI_ISL_417434Kinshasa2020-03-14
DRC/KN-0043/2020 EPI_ISL_417435Kinshasa2020-03-15
DRC/KN-0051/2020 EPI_ISL_417436Kinshasa2020-03-17
DRC/KN-0054/2020 EPI_ISL_417437Kinshasa2020-03-17
DRC/KN-0058/2020 EPI_ISL_417438Kinshasa2020-03-17
DRC/KN-0059/2020 EPI_ISL_417439Kinshasa2020-03-17
DRC/KN-0060/2020 EPI_ISL_417440Kinshasa2020-03-17
DRC/KN-0070/2020 EPI_ISL_417441Kinshasa2020-03-17
DRC/KN-0072/2020 EPI_ISL_417442Kinshasa2020-03-18
DRC/73/2020 EPI_ISL_417941Kinshasa2020-03-18
DRC/80/2020 EPI_ISL_417942Kinshasa2020-03-18
DRC/81/2020 EPI_ISL_417944Kinshasa2020-03-18
DRC/82/2020 EPI_ISL_417946Kinshasa2020-03-18
DRC/94/2020 EPI_ISL_417947Kinshasa2020-03-19
DRC/108/2020 EPI_ISL_417948Kinshasa2020-03-19
DRC/158/2020 EPI_ISL_417950Kinshasa2020-03-20
DRC/191/2020 EPI_ISL_417955Kinshasa2020-03-21
DRC/214/2020 EPI_ISL_420030Kinshasa2020-03-21
DRC/215/2020 EPI_ISL_420031Kinshasa2020-03-21
DRC/236/2020 EPI_ISL_420032Kinshasa2020-03-22
DRC/241/2020 EPI_ISL_420033Kinshasa2020-03-22
DRC/243/2020 EPI_ISL_420034Kinshasa2020-03-22
DRC/248/2020 EPI_ISL_420035Kinshasa2020-03-22
DRC/253/2020 EPI_ISL_420838Kinshasa2020-03-22
DRC/254/2020 EPI_ISL_420839Kinshasa2020-03-22
DRC/307/2020 EPI_ISL_420842Kinshasa2020-03
DRC/353/2020 EPI_ISL_420843Kinshasa2020-03
DRC/355/2020 EPI_ISL_420844Kinshasa2020-03
DRC/397/2020 EPI_ISL_420845Kinshasa2020-03-26
DRC/400/2020 EPI_ISL_420846Kinshasa2020-03
DRC/445/2020 EPI_ISL_420848Kinshasa2020-03
DRC/523/2020 EPI_ISL_420849Kinshasa2020-03-28
DRC/352/2020 EPI_ISL_420850Kinshasa2020-03
DRC/376/2020 EPI_ISL_420851Kinshasa2020-03-25
DRC/396/2020 EPI_ISL_420852Kinshasa2020-03-26
DRC/402/2020 EPI_ISL_420853Kinshasa2020-03-26
DRC/521/2020 EPI_ISL_420854Kinshasa2020-03-25
DRC/998/2020 EPI_ISL_429254Kinshasa2020-04-03
DRC/1131/2020 EPI_ISL_429255Kinshasa2020-04-05
DRC/1234/2020 EPI_ISL_429258Kinshasa2020-04-06
DRC/1249/2020 EPI_ISL_429259Kinshasa2020-04-06
EPI_ISL_431011Kinshasa
EPI_ISL_431012Kinshasa
EPI_ISL_434678Kinshasa
EPI_ISL_434679Kinshasa
EPI_ISL_434680Kinshasa
EPI_ISL_434681Kinshasa
EPI_ISL_434710Kinshasa
EPI_ISL_434711Kinshasa
EPI_ISL_435032Kinshasa
EPI_ISL_435033Kinshasa
EPI_ISL_435113Kinshasa
EPI_ISL_435114Kinshasa
EPI_ISL_435116Kinshasa
EPI_ISL_435117Kinshasa
EPI_ISL_435118Kinshasa
EPI_ISL_435156Kinshasa
EPI_ISL_435157Kinshasa
EPI_ISL_435158Kinshasa
EPI_ISL_435159Kinshasa
EPI_ISL_435160Kinshasa
EPI_ISL_435161Kinshasa
EPI_ISL_435162Kinshasa
EPI_ISL_435163Kinshasa
EPI_ISL_435164Kinshasa
EPI_ISL_435165Kinshasa
EPI_ISL_435166Kinshasa
EPI_ISL_435167Kinshasa
EPI_ISL_435168Kinshasa
EPI_ISL_436194Kinshasa
EPI_ISL_436412Kinshasa
EPI_ISL_437193Kinshasa
EPI_ISL_437194Kinshasa
EPI_ISL_437195Kinshasa
EPI_ISL_437196Kinshasa
EPI_ISL_437337Kinshasa
EPI_ISL_437338Kinshasa
EPI_ISL_437339Kinshasa
EPI_ISL_437340Kinshasa
EPI_ISL_437341Kinshasa
EPI_ISL_437342Kinshasa
EPI_ISL_437343Kinshasa
EPI_ISL_437344Kinshasa
EPI_ISL_437345Kinshasa
EPI_ISL_437346Kinshasa
EPI_ISL_437347Kinshasa
EPI_ISL_437348Kinshasa
EPI_ISL_437350Kinshasa
EPI_ISL_437351Kinshasa
EPI_ISL_437352Kinshasa
EPI_ISL_437353Kinshasa
EPI_ISL_437354Kinshasa
EPI_ISL_437355Kinshasa
EPI_ISL_437356Kinshasa
EPI_ISL_437357Kinshasa
EPI_ISL_437358Kinshasa
EPI_ISL_447230Kinshasa
EPI_ISL_447231Kinshasa
EPI_ISL_447232Kinshasa
EPI_ISL_447233Kinshasa
EPI_ISL_447234Kinshasa
EPI_ISL_447235Kinshasa
EPI_ISL_447236Kinshasa
EPI_ISL_447237Kinshasa
EPI_ISL_447238Kinshasa
EPI_ISL_447239Kinshasa
EPI_ISL_447240Kinshasa
EPI_ISL_447241Kinshasa
EPI_ISL_447242Kinshasa
EPI_ISL_447243Kinshasa
EPI_ISL_447244Kinshasa
EPI_ISL_447245Kinshasa
EPI_ISL_447246Kinshasa
EPI_ISL_447247Kinshasa
EPI_ISL_447248Kinshasa
EPI_ISL_447249Kinshasa
EPI_ISL_447596Kinshasa
EPI_ISL_447597Kinshasa
EPI_ISL_447598Kinshasa
EPI_ISL_447599Kinshasa
EPI_ISL_447600Kinshasa
EPI_ISL_447601Kinshasa
EPI_ISL_447602Kinshasa
EPI_ISL_447603Kinshasa
EPI_ISL_447604Kinshasa
EPI_ISL_447605Kinshasa
EPI_ISL_447606Kinshasa
EPI_ISL_447607Kinshasa
EPI_ISL_471396Kinshasa
EPI_ISL_471397Kinshasa
EPI_ISL_471398Kinshasa
EPI_ISL_471399Kinshasa
EPI_ISL_471400Kinshasa
EPI_ISL_471401Kinshasa
EPI_ISL_471402Kinshasa
EPI_ISL_471403Kinshasa
EPI_ISL_471404Kinshasa
EPI_ISL_471405Kinshasa
EPI_ISL_471406Kinshasa
EPI_ISL_471407Kinshasa
EPI_ISL_471408Kinshasa
EPI_ISL_471409Kinshasa
EPI_ISL_471410Kinshasa
EPI_ISL_471414Kinshasa
EPI_ISL_471415Kinshasa
EPI_ISL_495629Kinshasa
EPI_ISL_495630Kinshasa
EPI_ISL_495631Kinshasa
EPI_ISL_495632Kinshasa
EPI_ISL_495633Kinshasa
EPI_ISL_495634Kinshasa
EPI_ISL_495635Kinshasa
EPI_ISL_495636Kinshasa
EPI_ISL_495637Kinshasa
EPI_ISL_495638Kinshasa
EPI_ISL_495639Kinshasa
EPI_ISL_495640Kinshasa
EPI_ISL_495641Kinshasa
EPI_ISL_496491Kinshasa
EPI_ISL_496492Kinshasa
EPI_ISL_496493Kinshasa
EPI_ISL_496494Kinshasa
EPI_ISL_496495Kinshasa
EPI_ISL_496496Kinshasa
EPI_ISL_496497Kinshasa
EPI_ISL_496498Kinshasa
EPI_ISL_496499Kinshasa
EPI_ISL_496500Kinshasa
EPI_ISL_496501Kinshasa
EPI_ISL_496502Kinshasa
EPI_ISL_496503Kinshasa
EPI_ISL_496504Kinshasa
EPI_ISL_496505Kinshasa
EPI_ISL_496506Kinshasa
EPI_ISL_496507Kinshasa
EPI_ISL_496508Kinshasa
EPI_ISL_496509Kinshasa
EPI_ISL_496510Kinshasa
EPI_ISL_496511Kinshasa
EPI_ISL_496512Kinshasa
EPI_ISL_496513Kinshasa
EPI_ISL_496514Kinshasa
EPI_ISL_496515Kinshasa
EPI_ISL_496516Kinshasa
EPI_ISL_496517Kinshasa
EPI_ISL_513589Kinshasa
EPI_ISL_513590Kinshasa
EPI_ISL_513591Kinshasa
EPI_ISL_513592Kinshasa
EPI_ISL_513593Kinshasa
EPI_ISL_513594Kinshasa
EPI_ISL_513595Kinshasa
EPI_ISL_513596Kinshasa
EPI_ISL_513598Kinshasa
EPI_ISL_513599Kinshasa
EPI_ISL_513600Kinshasa
EPI_ISL_513601Kinshasa
EPI_ISL_513602Kinshasa
EPI_ISL_513603Kinshasa
EPI_ISL_513604Kinshasa
EPI_ISL_513605Kinshasa
EPI_ISL_513606Kinshasa
EPI_ISL_513607Kinshasa
EPI_ISL_513608Kinshasa
EPI_ISL_513609Kinshasa
EPI_ISL_513610Kinshasa
EPI_ISL_513619Kinshasa
EPI_ISL_513620Kinshasa
EPI_ISL_513621Kinshasa
EPI_ISL_513622Kinshasa
EPI_ISL_513623Kinshasa
EPI_ISL_513626Kinshasa
EPI_ISL_513627Kinshasa
EPI_ISL_513628Kinshasa
EPI_ISL_513629Kinshasa
EPI_ISL_513630Kinshasa
EPI_ISL_513631Kinshasa
EPI_ISL_514103Kinshasa
EPI_ISL_514104Kinshasa
EPI_ISL_514105Kinshasa
EPI_ISL_514106Kinshasa
EPI_ISL_514107Kinshasa
EPI_ISL_514108Kinshasa
EPI_ISL_514109Kinshasa
EPI_ISL_514110Kinshasa
EPI_ISL_514111Kinshasa
EPI_ISL_514112Kinshasa
EPI_ISL_514113Kinshasa
EPI_ISL_514114Kinshasa
EPI_ISL_514115Kinshasa
EPI_ISL_514116Kinshasa
EPI_ISL_514117Kinshasa
EPI_ISL_514118Kinshasa
EPI_ISL_514119Kinshasa
EPI_ISL_514120Kinshasa
EPI_ISL_514121Kinshasa
EPI_ISL_514122Kinshasa
EPI_ISL_514123Kinshasa
EPI_ISL_514124Kinshasa
EPI_ISL_514125Kinshasa
EPI_ISL_527489Kinshasa
EPI_ISL_527490Kinshasa
EPI_ISL_527491Kinshasa
EPI_ISL_527493Kinshasa
EPI_ISL_527495Kinshasa
EPI_ISL_527496Kinshasa
EPI_ISL_527497Kinshasa
EPI_ISL_527498Kinshasa
EPI_ISL_527499Kinshasa
EPI_ISL_527500Kinshasa
EPI_ISL_527501Kinshasa
EPI_ISL_527502Kinshasa
EPI_ISL_527503Kinshasa
EPI_ISL_527504Kinshasa
EPI_ISL_527505Kinshasa
EPI_ISL_527507Kinshasa
EPI_ISL_527508Kinshasa
EPI_ISL_527509Kinshasa
EPI_ISL_527510Kinshasa
EPI_ISL_527511Kinshasa
EPI_ISL_527512Kinshasa
EPI_ISL_527513Kinshasa
EPI_ISL_527514Kinshasa
EPI_ISL_527515Kinshasa
EPI_ISL_527516Kinshasa
EPI_ISL_527517Kinshasa
EPI_ISL_527518Kinshasa
EPI_ISL_527519Kinshasa
EPI_ISL_527520Kinshasa
EPI_ISL_527522Kinshasa
EPI_ISL_527525Kinshasa
EPI_ISL_527526Kinshasa
EPI_ISL_527527Kinshasa
EPI_ISL_527528Kinshasa
EPI_ISL_527529Kinshasa
EPI_ISL_527530Kinshasa
EPI_ISL_527531Kinshasa
EPI_ISL_527533Kinshasa
EPI_ISL_527534Kinshasa
EPI_ISL_527535Kinshasa
EPI_ISL_527536Kinshasa
EPI_ISL_527537Kinshasa
EPI_ISL_527539Kinshasa
EPI_ISL_527540Kinshasa
EPI_ISL_527541Kinshasa
EPI_ISL_527542Kinshasa
EPI_ISL_527545Kinshasa
EPI_ISL_527546Kinshasa
EPI_ISL_527549Kinshasa
EPI_ISL_527550Kinshasa
EPI_ISL_527551Kinshasa
EPI_ISL_527552Kinshasa
EPI_ISL_527553Kinshasa
EPI_ISL_527554Kinshasa
EPI_ISL_527555Kinshasa
EPI_ISL_527556Kinshasa
EPI_ISL_527559Kinshasa
EPI_ISL_527560Kinshasa
EPI_ISL_527561Kinshasa
EPI_ISL_527562Kinshasa
EPI_ISL_527563Kinshasa
EPI_ISL_527564Kinshasa
EPI_ISL_527565Kinshasa
EPI_ISL_527566Kinshasa
EPI_ISL_527567Kinshasa
EPI_ISL_527568Kinshasa
EPI_ISL_527569Kinshasa
EPI_ISL_527570Kinshasa
EPI_ISL_527571Kinshasa
EPI_ISL_527572Kinshasa
EPI_ISL_591083Kinshasa
EPI_ISL_591084Kinshasa
EPI_ISL_591085Kinshasa
EPI_ISL_591086Kinshasa
EPI_ISL_591087Kinshasa
EPI_ISL_591088Kinshasa
EPI_ISL_591089Kinshasa
EPI_ISL_487365Kongo Central
EPI_ISL_487369Kongo Central
EPI_ISL_513611Kongo Central
EPI_ISL_513612Kongo Central
EPI_ISL_513613Kongo Central
EPI_ISL_513614Kongo Central
EPI_ISL_513615Kongo Central
EPI_ISL_513616Kongo Central
EPI_ISL_513617Kongo Central
EPI_ISL_513618Kongo Central
EPI_ISL_513624Kongo Central
EPI_ISL_513625Kongo Central
EPI_ISL_527506Kongo Central
EPI_ISL_527521Kongo Central
EPI_ISL_527523Kongo Central
EPI_ISL_527538Kongo Central
EPI_ISL_527543Kongo Central
EPI_ISL_527544Kongo Central
EPI_ISL_527557Kongo Central
EPI_ISL_527558Kongo Central
EPI_ISL_487192Kongo-Central
EPI_ISL_527547Nord Kivu
DRC/299/2020 EPI_ISL_420840Sud Kivu2020-03-20
DRC/300/2020 EPI_ISL_420841Sud Kivu2020-03-22
EPI_ISL_527492Sud Kivu
EPI_ISL_527494Sud Kivu
EPI_ISL_527524Sud Kivu
EPI_ISL_527532Sud Kivu
EPI_ISL_527548Sud Kivu

Download all results


GISAID data provided on this website is subject to GISAID’s Terms and Conditions | Privacy policy of University of Turin.