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Status of SARS-CoV-2 detection systems (RT-PCR)
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Update: Sun Jan 31 07:00:30 2021 (UTC+2)

Author: Olivier Friard - Department of Life Sciences and Systems Biology - University of Turin - Italy

We gratefully acknowledge the Authors of the Originating and Submitting laboratories of the genetic sequence and metadata shared via GISAID, on which this research is based.
The isolates collection dates are in YYYY-MM-DD format (ISO 8601).

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Belarus

Number of isolates sequences available: 35

Method

When the target sequence of amplification systems is available the primers and probe are aligned against the target sequence using the Smith-Waterman local sequence alignment algorithm and the alignments are classified in 3 categories:
             Full match - All primers and probe have a 100% identity with the target sequence. In case of a 2 probes system (RdRP) at least one probe must have a 100% identity.
             The identities of forward/reverse primers AND probe are greater than or equal to 80% AND the length of the amplification product is comprised between the reference length plus/minus 8 bp.
             The identity of one primer OR the probe are less than 80% OR the length of the amplification product is NOT comprised between reference length plus/minus 8 bp.

If the target sequence is not available the The sequence is not available warning is shown.
Please note that the reverse primer sequence is shown reverted-complemented in the alignments.

Results

Move the mouse cursor over elements to see the details.

Virus name / Accession IDRegionCollection date2019-nCoV_N12019-nCoV_N22019-nCoV_N3E-SarbecoRdRP
Belarus/ChVir2072/2020 EPI_ISL_4196922020-03
Belarus/ChVir2073/2020 EPI_ISL_4196932020-03
EPI_ISL_451948
EPI_ISL_860797
EPI_ISL_860798
EPI_ISL_860799
EPI_ISL_860800
EPI_ISL_860801
EPI_ISL_860802
EPI_ISL_860803
EPI_ISL_860804
EPI_ISL_860805
EPI_ISL_860806
EPI_ISL_860807
EPI_ISL_860808
EPI_ISL_860809
EPI_ISL_860810
EPI_ISL_860811
EPI_ISL_860812
EPI_ISL_860813
EPI_ISL_860814
EPI_ISL_860815
EPI_ISL_860816
EPI_ISL_860817
EPI_ISL_860818
EPI_ISL_861456
EPI_ISL_861457
EPI_ISL_861458
EPI_ISL_754232Gomel region
EPI_ISL_754230Minsk
EPI_ISL_754229Minsk region
EPI_ISL_754231Minsk region
EPI_ISL_754233Minsk region
EPI_ISL_754235Mogilev region
EPI_ISL_754234Vitebsk region

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